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Sample GSM85217

Query DataSets for GSM85217

Status

Public on Jun 30, 2006

Title

thyroid_normal_3

Sample type

RNA

Source name

human thyroid

Organism

Homo sapiens

Characteristics

thyroid sample containing normal cells

Extracted molecule

total RNA

Label

biotin

Label protocol

Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures

Description

normal thyroid tissue extracted adyacent to tumor tissue

Data processing

dChip v 1.3 was used for normalization, model-based gene expression estimatation and outlier detection ; Affymetrix Microarray Suite version 5.0 was used to calculate the present call of each transcript

Submission date

Nov 25, 2005

Last update date

Aug 28, 2018

Contact name

Ismael Reyes

E-mail(s)

ismael_reyes@nymc.edu

Organization name

New York Medical College

Street address

Microbiology department BSB room 311

City

Valhalla

State/province

ZIP/Postal code

10595

Country

USA

Platform ID

GPL570

Series (1)

GSE3678

PTC versus paired normal thyroid tissue

Relations

Reanalyzed by

GSE64985

Reanalyzed by

GSE119087

Data table header descriptions
ID_REF
VALUE	model-based expression estimates using dChip v 1.3
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF	VALUE	ABS_CALL
AFFX-BioB-5_at	328.609	P
AFFX-BioB-M_at	414.805	P
AFFX-BioB-3_at	411.618	P
AFFX-BioC-5_at	497.139	P
AFFX-BioC-3_at	490.805	P
AFFX-BioDn-5_at	1626.77	P
AFFX-BioDn-3_at	3891.09	P
AFFX-CreX-5_at	6430.14	P
AFFX-CreX-3_at	7533.8	P
AFFX-DapX-5_at	37.8017	A
AFFX-DapX-M_at	34.5253	A
AFFX-DapX-3_at	58.2894	A
AFFX-LysX-5_at	50.864	P
AFFX-LysX-M_at	65.0998	A
AFFX-LysX-3_at	53.2405	A
AFFX-PheX-5_at	50.1352	A
AFFX-PheX-M_at	31.6225	A
AFFX-PheX-3_at	52.1572	A
AFFX-ThrX-5_at	38.8284	A
AFFX-ThrX-M_at	26.5488	A

Total number of rows: 54675

Table truncated, full table size 1105 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM85217.CEL.gz	8.1 Mb	(ftp)(http)	CEL
GSM85217.EXP.gz	270 b	(ftp)(http)	EXP