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Sample GSM782113 Query DataSets for GSM782113
Status Public on Jan 03, 2013
Title T341
Sample type genomic
 
Source name T341
Organism Homo sapiens
Characteristics sample id: T341
tissue type: Bronchiolo-alveolar adenocarcinoma
Extracted molecule genomic DNA
Extraction protocol DNAs were extracted using the QIAamp DNA mini kit (Qiagen, Courtaboeuf, France) from frozen tissue samples.
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Data processing standard Illumina protocol
 
Submission date Aug 18, 2011
Last update date Jan 03, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL6986
Series (1)
GSE31483 SNP data from 82 lung carcinomas and 2 cell lines.

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs10000010-126_B_F_IFB1153208421:0 -0.0128 0.4945 2410 3148 0.442 0.523 0.965 0.554
rs10000023-126_B_F_IFB1153358872:0 0.124 0 9965 502 2.16 0.091 2.252 0.027
rs10000030-120_B_R_IFB1137703207:0 -0.0104 1 131 4340 0.015 0.731 0.746 0.987
rs1000007-123_T_F_IFB1152225452:0 -0.034 0.4958 2484 3583 0.472 0.661 1.133 0.605
rs10000092-123_T_R_IFB1153358875:0 -0.1808 0.4806 2116 2013 0.449 0.429 0.878 0.486
rs10000121-126_B_R_IFB1136471760:0 -0.2404 0.4942 817 1332 0.18 0.301 0.481 0.656
rs1000014-126_B_R_IFB1136184019:0 0.0114 0.9867 742 8372 0.112 1.378 1.49 0.948
rs10000141-126_T_F_IFB1137734411:0 -0.0416 1 139 5565 0.014 0.937 0.951 0.99
rs1000016-126_B_R_IFB1156563530:0 -0.0331 0 8031 165 1.443 0.014 1.457 0.006
rs10000169-119_T_R_IFB1135612081:0 0.1269 0.4912 2856 4104 0.557 0.779 1.336 0.605
rs1000022-126_B_F_IFB1135126284:0 -0.2817 0 3368 78 0.754 0.011 0.765 0.009
rs10000272-126_T_R_IFB1136539894:0 -0.2321 5e-04 6259 82 1.431 0.012 1.443 0.005
rs10000282-121_T_R_IFB1136743500:0 -0.1375 1 169 6372 0.015 1.062 1.078 0.991
rs10000300-126_T_R_IFB1152704058:0 -0.2289 0.5674 1661 2453 0.277 0.405 0.682 0.617
rs1000031-123_B_F_IFB1135583872:0 0.2443 0.9937 370 8863 0.047 1.692 1.74 0.982
rs1000032-126_B_R_IFB1136145093:0 0.0421 0.5073 2232 5131 0.379 0.844 1.223 0.731
rs10000388-126_B_F_IFB1135932472:0 -0.3113 0.9867 220 4827 0.027 0.871 0.898 0.98
rs1000040-126_T_F_IFB1152704061:0 -0.0155 1 245 5765 0.024 0.957 0.981 0.984
rs1000041-126_T_F_IFB1153889147:0 0.0533 1 253 6603 0.035 1.418 1.454 0.984
rs10000432-126_T_R_IFB1135756304:0 -0.3491 0.596 1129 2328 0.214 0.436 0.65 0.71

Total number of rows: 370404

Table truncated, full table size 28636 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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