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Sample GSM782102 Query DataSets for GSM782102
Status Public on Jan 03, 2013
Title T234
Sample type genomic
 
Source name T234
Organism Homo sapiens
Characteristics sample id: T234
tissue type: Adenocarcinoma
Extracted molecule genomic DNA
Extraction protocol DNAs were extracted using the QIAamp DNA mini kit (Qiagen, Courtaboeuf, France) from frozen tissue samples.
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Data processing standard Illumina protocol
 
Submission date Aug 18, 2011
Last update date Jan 03, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL6986
Series (1)
GSE31483 SNP data from 82 lung carcinomas and 2 cell lines.

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs10000010-126_B_F_IFB1153208421:0 0.335 0.4868 3562 4266 0.57 0.657 1.227 0.545
rs10000023-126_B_F_IFB1153358872:0 0.2685 0 12525 612 2.388 0.1 2.489 0.027
rs10000030-120_B_R_IFB1137703207:0 0.2713 0.9961 220 5683 0.021 0.885 0.906 0.985
rs1000007-123_T_F_IFB1152225452:0 0.2402 0.0011 8469 197 1.139 0.018 1.157 0.01
rs10000092-123_T_R_IFB1153358875:0 0.1599 0 5379 102 1.021 0.011 1.032 0.007
rs10000121-126_B_R_IFB1136471760:0 0.0285 0.9987 155 2992 0.02 0.614 0.634 0.979
rs1000014-126_B_R_IFB1136184019:0 0.0143 0.9941 844 10187 0.096 1.386 1.482 0.956
rs10000141-126_T_F_IFB1137734411:0 0.2007 1 148 7177 0.006 1.118 1.124 0.997
rs1000016-126_B_R_IFB1156563530:0 0.3182 0 13120 282 1.839 0.019 1.859 0.007
rs10000169-119_T_R_IFB1135612081:0 0.0674 0.0023 7273 207 1.081 0.025 1.106 0.015
rs1000022-126_B_F_IFB1135126284:0 -0.1926 0.9965 233 4177 0.028 0.763 0.791 0.977
rs10000272-126_T_R_IFB1136539894:0 0.0375 0 8333 112 1.727 0.012 1.739 0.004
rs10000282-121_T_R_IFB1136743500:0 0.1156 1 203 8943 0.012 1.271 1.283 0.994
rs10000300-126_T_R_IFB1152704058:0 0.3755 0.4872 3675 4152 0.485 0.561 1.046 0.547
rs1000031-123_B_F_IFB1135583872:0 0.1285 1 240 9932 0.016 1.574 1.589 0.994
rs1000032-126_B_R_IFB1136145093:0 0.2918 1 312 11014 0.023 1.499 1.522 0.99
rs10000388-126_B_F_IFB1135932472:0 0.5646 2e-04 11956 268 1.835 0.025 1.86 0.009
rs1000040-126_T_F_IFB1152704061:0 0.055 0 7979 271 1.073 0.026 1.099 0.015
rs1000041-126_T_F_IFB1153889147:0 -0.0473 1 285 6950 0.033 1.323 1.356 0.984
rs10000432-126_T_R_IFB1135756304:0 -0.0363 0.6071 1953 3844 0.26 0.547 0.807 0.717

Total number of rows: 370404

Table truncated, full table size 28611 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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