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Sample GSM782100 Query DataSets for GSM782100
Status Public on Jan 03, 2013
Title T229
Sample type genomic
 
Source name T229
Organism Homo sapiens
Characteristics sample id: T229
tissue type: Bronchiolo-alveolar adenocarcinoma
Extracted molecule genomic DNA
Extraction protocol DNAs were extracted using the QIAamp DNA mini kit (Qiagen, Courtaboeuf, France) from frozen tissue samples.
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Data processing standard Illumina protocol
 
Submission date Aug 18, 2011
Last update date Jan 03, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL6986
Series (1)
GSE31483 SNP data from 82 lung carcinomas and 2 cell lines.

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs10000010-126_B_F_IFB1153208421:0 0.2602 0.519 4197 5314 0.512 0.651 1.163 0.576
rs10000023-126_B_F_IFB1153358872:0 0.0992 0 16301 883 2.111 0.105 2.216 0.032
rs10000030-120_B_R_IFB1137703207:0 0.0442 1 205 6114 0.015 0.76 0.775 0.987
rs1000007-123_T_F_IFB1152225452:0 -0.0144 0 7212 157 0.958 0.011 0.969 0.008
rs10000092-123_T_R_IFB1153358875:0 -0.1824 0.0045 6205 164 0.798 0.016 0.815 0.013
rs10000121-126_B_R_IFB1136471760:0 0.0711 0.4708 1804 2498 0.236 0.354 0.59 0.626
rs1000014-126_B_R_IFB1136184019:0 0.2547 0.9803 1233 11763 0.148 1.626 1.774 0.942
rs10000141-126_T_F_IFB1137734411:0 0.1224 1 168 8512 0.007 1.058 1.064 0.996
rs1000016-126_B_R_IFB1156563530:0 0.0729 0.0017 10319 326 1.542 0.026 1.568 0.011
rs10000169-119_T_R_IFB1135612081:0 -0.0247 0.5416 3931 6136 0.456 0.737 1.194 0.647
rs1000022-126_B_F_IFB1135126284:0 0.1711 0 8342 223 1.029 0.018 1.047 0.011
rs10000272-126_T_R_IFB1136539894:0 -0.0971 1e-04 11667 144 1.572 0.013 1.584 0.005
rs10000282-121_T_R_IFB1136743500:0 -0.0593 0.989 398 8386 0.038 1.106 1.143 0.978
rs10000300-126_T_R_IFB1152704058:0 -0.0085 0.997 280 5097 0.022 0.71 0.733 0.98
rs1000031-123_B_F_IFB1135583872:0 -0.0977 0.8499 2983 10152 0.338 1.223 1.56 0.828
rs1000032-126_B_R_IFB1136145093:0 0.0958 1 293 9455 0.021 1.308 1.329 0.99
rs10000388-126_B_F_IFB1135932472:0 0.2508 0.4612 5912 5842 0.829 0.801 1.629 0.489
rs1000040-126_T_F_IFB1152704061:0 0.3264 6e-04 9279 360 1.291 0.036 1.327 0.018
rs1000041-126_T_F_IFB1153889147:0 -0.1056 0.9883 658 9366 0.063 1.254 1.317 0.968
rs10000432-126_T_R_IFB1135756304:0 -0.1216 1 224 5313 0.017 0.723 0.74 0.985

Total number of rows: 370404

Table truncated, full table size 28785 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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