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Sample GSM782078 Query DataSets for GSM782078
Status Public on Jan 03, 2013
Title T128
Sample type genomic
 
Source name T128
Organism Homo sapiens
Characteristics sample id: T128
tissue type: Adenocarcinoma
Extracted molecule genomic DNA
Extraction protocol DNAs were extracted using the QIAamp DNA mini kit (Qiagen, Courtaboeuf, France) from frozen tissue samples.
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Data processing standard Illumina protocol
 
Submission date Aug 18, 2011
Last update date Jan 03, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL6986
Series (1)
GSE31483 SNP data from 82 lung carcinomas and 2 cell lines.

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs10000010-126_B_F_IFB1153208421:0 -0.0954 0 5438 50 0.837 0 0.837 0
rs10000023-126_B_F_IFB1153358872:0 0.0758 0.4002 8490 5701 1.366 1.006 2.372 0.404
rs10000030-120_B_R_IFB1137703207:0 0.0438 1 201 5522 0.012 0.764 0.776 0.99
rs1000007-123_T_F_IFB1152225452:0 -0.059 0.0012 6735 155 0.926 0.015 0.94 0.01
rs10000092-123_T_R_IFB1153358875:0 -0.3721 0.0061 4375 127 0.698 0.016 0.714 0.015
rs10000121-126_B_R_IFB1136471760:0 -0.1255 0 2365 34 0.386 0.004 0.39 0.007
rs1000014-126_B_R_IFB1136184019:0 0.1322 0 14829 1430 2.146 0.194 2.34 0.057
rs10000141-126_T_F_IFB1137734411:0 -0.0582 1 200 6720 0.01 0.93 0.94 0.993
rs1000016-126_B_R_IFB1156563530:0 0.0182 2e-04 9963 262 1.488 0.022 1.51 0.009
rs10000169-119_T_R_IFB1135612081:0 -0.1855 0.549 2994 4648 0.402 0.663 1.066 0.653
rs1000022-126_B_F_IFB1135126284:0 -0.0499 0.003 5432 161 0.876 0.023 0.899 0.017
rs10000272-126_T_R_IFB1136539894:0 0.0578 0.0024 10284 152 1.744 0.02 1.764 0.007
rs10000282-121_T_R_IFB1136743500:0 -0.3126 1 231 6954 0.014 0.941 0.955 0.99
rs10000300-126_T_R_IFB1152704058:0 -0.1707 1 221 4463 0.008 0.645 0.653 0.992
rs1000031-123_B_F_IFB1135583872:0 0.106 1 285 10828 0.015 1.549 1.564 0.994
rs1000032-126_B_R_IFB1136145093:0 0.3272 0.4023 4232 5673 0.596 0.801 1.397 0.593
rs10000388-126_B_F_IFB1135932472:0 0.2708 2e-04 10692 189 1.497 0.021 1.517 0.009
rs1000040-126_T_F_IFB1152704061:0 -0.0421 0.0025 7128 280 0.997 0.031 1.028 0.02
rs1000041-126_T_F_IFB1153889147:0 0.112 1 440 8310 0.033 1.48 1.512 0.986
rs10000432-126_T_R_IFB1135756304:0 -0.1154 0.0016 4327 180 0.586 0.023 0.61 0.025

Total number of rows: 370404

Table truncated, full table size 28653 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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