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Sample GSM782041 Query DataSets for GSM782041
Status Public on Jan 03, 2013
Title T39
Sample type genomic
 
Source name T39
Organism Homo sapiens
Characteristics sample id: T39
tissue type: Bronchiolo-alveolar adenocarcinoma
Extracted molecule genomic DNA
Extraction protocol DNAs were extracted using the QIAamp DNA mini kit (Qiagen, Courtaboeuf, France) from frozen tissue samples.
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Data processing standard Illumina protocol
 
Submission date Aug 18, 2011
Last update date Jan 03, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL6986
Series (1)
GSE31483 SNP data from 82 lung carcinomas and 2 cell lines.

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs10000010-126_B_F_IFB1153208421:0 -0.1699 0.5217 2333 3433 0.378 0.485 0.863 0.578
rs10000023-126_B_F_IFB1153358872:0 0.0271 0.4634 8949 6838 1.23 1.091 2.322 0.462
rs10000030-120_B_R_IFB1137703207:0 -0.3691 1 97 4022 0.01 0.572 0.582 0.989
rs1000007-123_T_F_IFB1152225452:0 0.0316 0 8547 132 0.988 0.013 1.001 0.008
rs10000092-123_T_R_IFB1153358875:0 -0.0287 0.9966 312 4895 0.029 0.786 0.816 0.976
rs10000121-126_B_R_IFB1136471760:0 0.2218 0 3376 68 0.489 0.009 0.498 0.012
rs1000014-126_B_R_IFB1136184019:0 0.415 0.163 19055 5203 2.191 0.669 2.86 0.189
rs10000141-126_T_F_IFB1137734411:0 -0.3031 0.5192 1851 3760 0.313 0.534 0.847 0.662
rs1000016-126_B_R_IFB1156563530:0 0.1374 0 13702 209 1.626 0.013 1.64 0.005
rs10000169-119_T_R_IFB1135612081:0 0.0327 0.4865 4352 4957 0.527 0.723 1.25 0.599
rs1000022-126_B_F_IFB1135126284:0 -0.2056 0.0012 5484 142 0.789 0.018 0.807 0.014
rs10000272-126_T_R_IFB1136539894:0 0.0601 0 12070 118 1.756 0.011 1.767 0.004
rs10000282-121_T_R_IFB1136743500:0 -0.1006 1 179 8440 0.009 1.095 1.104 0.995
rs10000300-126_T_R_IFB1152704058:0 -0.1407 0.593 2519 3355 0.281 0.441 0.722 0.639
rs1000031-123_B_F_IFB1135583872:0 -0.2527 0.7105 4613 6907 0.556 1.009 1.565 0.679
rs1000032-126_B_R_IFB1136145093:0 0.2218 1 264 11078 0.015 1.436 1.451 0.993
rs10000388-126_B_F_IFB1135932472:0 0.3336 1 226 9066 0.015 1.38 1.395 0.993
rs1000040-126_T_F_IFB1152704061:0 -0.1903 0.0022 7882 259 0.9 0.028 0.928 0.02
rs1000041-126_T_F_IFB1153889147:0 -0.0434 1 446 8218 0.043 1.321 1.364 0.979
rs10000432-126_T_R_IFB1135756304:0 -0.2006 0.5763 2125 3438 0.245 0.476 0.721 0.697

Total number of rows: 370404

Table truncated, full table size 28637 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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