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Sample GSM782027 Query DataSets for GSM782027
Status Public on Jan 03, 2013
Title T10
Sample type genomic
 
Source name T10
Organism Homo sapiens
Characteristics sample id: T10
tissue type: Bronchiolo-alveolar adenocarcinoma
Extracted molecule genomic DNA
Extraction protocol DNAs were extracted using the QIAamp DNA mini kit (Qiagen, Courtaboeuf, France) from frozen tissue samples.
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Data processing standard Illumina protocol
 
Submission date Aug 18, 2011
Last update date Jan 03, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL6986
Series (1)
GSE31483 SNP data from 82 lung carcinomas and 2 cell lines.

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs10000010-126_B_F_IFB1153208421:0 0.0537 0.5873 3338 4838 0.392 0.603 0.995 0.633
rs10000023-126_B_F_IFB1153358872:0 -0.133 0 13496 639 1.797 0.09 1.886 0.032
rs10000030-120_B_R_IFB1137703207:0 -0.2958 0.6729 1005 3562 0.116 0.443 0.559 0.837
rs1000007-123_T_F_IFB1152225452:0 -0.1414 0 6974 114 0.879 0.008 0.887 0.006
rs10000092-123_T_R_IFB1153358875:0 0.0279 0.5152 3761 3273 0.491 0.521 1.012 0.519
rs10000121-126_B_R_IFB1136471760:0 -0.0154 0.002 2988 74 0.412 0.011 0.423 0.017
rs1000014-126_B_R_IFB1136184019:0 -0.0429 0.5898 7797 8386 0.914 1.065 1.979 0.549
rs10000141-126_T_F_IFB1137734411:0 0.0486 0.4362 3928 4767 0.475 0.591 1.066 0.569
rs1000016-126_B_R_IFB1156563530:0 0.1042 0 12382 287 1.581 0.021 1.602 0.009
rs10000169-119_T_R_IFB1135612081:0 -0.2382 0 6574 144 0.879 0.015 0.894 0.011
rs1000022-126_B_F_IFB1135126284:0 -0.044 1 302 5183 0.027 0.849 0.876 0.98
rs10000272-126_T_R_IFB1136539894:0 -0.4336 0.0035 8943 135 1.239 0.016 1.255 0.008
rs10000282-121_T_R_IFB1136743500:0 -0.409 1 234 6839 0.016 0.878 0.894 0.988
rs10000300-126_T_R_IFB1152704058:0 -0.1873 0.4315 3029 2672 0.356 0.341 0.697 0.486
rs1000031-123_B_F_IFB1135583872:0 0.0844 0.4169 10109 6081 1.348 0.915 2.263 0.38
rs1000032-126_B_R_IFB1136145093:0 -0.0929 1 248 9037 0.015 1.151 1.166 0.992
rs10000388-126_B_F_IFB1135932472:0 0.1349 1 246 8831 0.013 1.203 1.215 0.993
rs1000040-126_T_F_IFB1152704061:0 0.0085 0.0014 8625 305 1.034 0.03 1.065 0.019
rs1000041-126_T_F_IFB1153889147:0 -0.057 1 457 8174 0.039 1.311 1.349 0.981
rs10000432-126_T_R_IFB1135756304:0 0.0613 0.4899 2756 3744 0.34 0.526 0.866 0.635

Total number of rows: 370404

Table truncated, full table size 28748 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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