|
Status |
Public on Apr 22, 2024 |
Title |
genomic DNA from FFPE material of MB patient biopsy 10 |
Sample type |
genomic |
|
|
Source name |
FFPE material of MB patient biopsy 10
|
Organism |
Homo sapiens |
Characteristics |
gender: Male proteome subtype: G4 main molecular subgroup: GR4
|
Extracted molecule |
genomic DNA |
Extraction protocol |
100 - 250 ng DNAgenomic DNA was extracted and purified using Illumina FFPE Restore Kit
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation850K/EPIC Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
GR4 sample
|
Data processing |
Raw idats files were processed further in Rstudio (version 4.3.0) using minfi package
|
|
|
Submission date |
Sep 21, 2023 |
Last update date |
Apr 22, 2024 |
Contact name |
Julia Elisabeth Neumann |
Organization name |
University Hospital Hamburg Eppendorf
|
Department |
ZMNH
|
Street address |
Martinistrasse 52
|
City |
Hamburg |
ZIP/Postal code |
20251 |
Country |
Germany |
|
|
Platform ID |
GPL23976 |
Series (2) |
GSE243768 |
Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level [methylation 2] |
GSE243796 |
Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level |
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