|
| Status |
Public on Apr 22, 2024 |
| Title |
genomic DNA from FFPE material of MB patient biopsy 3 |
| Sample type |
genomic |
| |
|
| Source name |
FFPE material of MB patient biopsy 3
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
proteome subtype: WNT
main molecular subgroup: WNT
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
100 - 250 ng DNAgenomic DNA was extracted and purified using Illumina FFPE Restore Kit
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation850K/EPIC Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
WNT sample
|
| Data processing |
Raw idats files were processed further in Rstudio (version 4.3.0) using minfi package
|
| |
|
| Submission date |
Sep 21, 2023 |
| Last update date |
Apr 22, 2024 |
| Contact name |
Julia Elisabeth Neumann |
| Organization name |
University Hospital Hamburg Eppendorf
|
| Department |
ZMNH
|
| Street address |
Martinistrasse 52
|
| City |
Hamburg |
| ZIP/Postal code |
20251 |
| Country |
Germany |
| |
|
| Platform ID |
GPL23976 |
| Series (2) |
| GSE243768 |
Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level [methylation 2] |
| GSE243796 |
Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level |
|
