disease state: IDHmut Astro_MS material: FFPE Sex: F tissue: brain
Treatment protocol
An automated extraction was done with a Maxwell system (Promega, Fitchburg, WI, USA) and the Maxwell 16 FFPE Plus LEV DNA Purification Kit according to the manufacturer’s instructions.
Growth protocol
-
Extracted molecule
genomic DNA
Extraction protocol
Illumina protocol
Label
Cy3 and Cy5
Label protocol
Illumina protocol
Hybridization protocol
Illumina protocol
Scan protocol
Illumina iScan System according to the manufacturer's protocol
Data processing
Bioconductor (Version 3.3) package minifi (Version 1.18) using function 'preprocessIllumina' Average beta