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Sample GSM7787579 Query DataSets for GSM7787579
Status Public on Dec 27, 2023
Title Case ID_03
Sample type genomic
 
Source name IDHmut Astro_MS
Organism Homo sapiens
Characteristics disease state: IDHmut Astro_MS
material: FFPE
Sex: F
tissue: brain
Treatment protocol An automated extraction was done with a Maxwell system (Promega, Fitchburg, WI, USA) and the Maxwell 16 FFPE Plus LEV DNA Purification Kit according to the manufacturer’s instructions.
Growth protocol -
Extracted molecule genomic DNA
Extraction protocol Illumina protocol
Label Cy3 and Cy5
Label protocol Illumina protocol
 
Hybridization protocol Illumina protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Data processing Bioconductor (Version 3.3) package minifi (Version 1.18) using function 'preprocessIllumina' Average beta
 
Submission date Sep 18, 2023
Last update date Dec 27, 2023
Contact name Daniel Schrimpf
E-mail(s) daniel.schrimpf@med.uni-heidelberg.de
Organization name University Hospital Heidelberg, Intitute of Pathology
Department Neuropathology
Street address Im Neuenheimer Feld 224
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL13534
Series (1)
GSE243465 Concurrent gliomas in patients with multiple sclerosis

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.855051161534515 3.678e-38
cg00000109 0.839859043024016 3.678e-38
cg00000165 0.164953027252704 3.678e-38
cg00000236 0.894355877532664 3.678e-38
cg00000289 0.774314018539919 3.678e-38
cg00000292 0.855359005660109 3.678e-38
cg00000321 0.65005408617872 3.678e-38
cg00000363 0.769505247863515 3.678e-38
cg00000622 0.0342564720048164 3.678e-38
cg00000658 0.806147267087544 3.678e-38
cg00000714 0.143707865917842 3.678e-38
cg00000721 0.94782630289648 3.678e-38
cg00000734 0.114512386147379 3.678e-38
cg00000769 0.0504770357222099 3.678e-38
cg00000884 0.841291283699331 3.678e-38
cg00000905 0.0669784464590542 3.678e-38
cg00000924 0.585952070910244 3.678e-38
cg00000948 0.932588606558926 3.678e-38
cg00001099 0.823660948573534 3.678e-38
cg00001245 0.0973518111964874 3.678e-38

Total number of rows: 408768

Table truncated, full table size 15543 Kbytes.




Supplementary file Size Download File type/resource
GSM7787579_9741950087_R03C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM7787579_9741950087_R03C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT

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