|
| Status |
Public on May 14, 2012 |
| Title |
Somatic.Primary_HPLF260______Male_206.559.1.1 |
| Sample type |
genomic |
| |
|
| Source name |
Somatic.Primary_HPLF260______Male_206.559.1.1
|
| Organism |
Homo sapiens |
| Characteristics |
loring pipeline sample id: 206.559.1.1
loring pipeline stem cell matrix version: stem cell matrix version 342
cell type: Somatic.Primary
cell line: HPLF260
gender: Male
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
Illumina_HumanMethylation27k
|
| Data processing |
Genome Studio software v2010.3, Normalization method: Average beta values are range scaled.
|
| |
|
| Submission date |
Jul 13, 2011 |
| Last update date |
May 14, 2012 |
| Contact name |
Kristopher L. Nazor |
| E-mail(s) |
kristopher.nazor@gmail.com
|
| Organization name |
The Scripps Research Institute
|
| Department |
Regenerative Medicine
|
| Lab |
Loring
|
| Street address |
10550 North Torrey Pines Road
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
| |
|
| Platform ID |
GPL8490 |
| Series (2) |
| GSE30653 |
Recurrent Variations in DNA Methylation in Human Pluripotent Stem Cells and their Differentiated Derivatives [Illumina Infinium 27K DNA Methylation] |
| GSE30654 |
Recurrent Variations in DNA Methylation in Human Pluripotent Stem Cells and their Differentiated Derivatives |
|
