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Sample GSM68883 Query DataSets for GSM68883
Status Public on Mar 27, 2007
Title sigenae.org:MBA:-649; PF_PigL_Damage_02d
Sample type RNA
 
Source name PF_PigL_Damage_02d
Organism Sus scrofa
Characteristics Origin: Longissimus dorsi
Origin: Muscle
Extracted molecule total RNA
Extraction protocol RNA extraction Qiagen Fibrous Tissue_PF
Label P33
 
Scan protocol Image scan; BZScan is a free java tool for automatic quantification of DNA microarrays with radioactive labeling.
Description PF_PigL_Damage_02d
Data processing mean of the duplicate minus mean of the membrane
 
Submission date Aug 09, 2005
Last update date Mar 27, 2007
Contact name Laurence Liaubet
E-mail(s) laurence.liaubet@inra.fr
Organization name INRA
Department Animal Genetic
Lab GenPhySE
Street address chemin de borde rouge
City Castanet tolosan
ZIP/Postal code 31326
Country France
 
Platform ID GPL2731
Series (1)
GSE3217 Gene expression profiling in skeletal muscle after the intramuscular administration of a pharmaceutical vehicle

Data table header descriptions
ID_REF ID_REF
ReporterId Internal identifier Internal indentifier of the reporter; Type: Int; Scale: Linear
X coordinate on array X coordinate on array; Type: Int; Scale: Linear
Y coordinate on array Y coordinate on array; Type: Int; Scale: Linear
Spot diameter Spot diameter; Type: Int; Scale: Linear
Q(Image.Constant) Quantification value. using fixed user-defined diameter and measured intensities; Type: Float; Scale: Linear
Q(Image.Variable) Quantification value. using variable. automatically determined diameter and measured intensities; Type: Float; Scale: Linear
Q(Fit.Constant) Quantification value. using fixed user-defined diameter and fitted intensities; Type: Float; Scale: Linear
Q(Fit.Variable) Quantification value. using variable. automatically determined diameter and fitted intensities; Type: Float; Scale: Linear
Fit Correction for local background noise correction; Type: Float; Scale: Linear
QM Quality factor; Type: Float; Scale: Linear
Spot Quality Spot Quality; Type: Float; Scale: Linear
Overshining Correction Overshining Correction; Type: Float; Scale: Linear
VALUE VALUE: mean of the duplicate minus mean of the membrane. Each membrane corresponds to a BioAssay left and a BioAssay right; Type: Float; Scale: Ln
Reporters flagged have been excluded from the analysis Flag; Type: int; Scale: Linear

Data table
ID_REF ReporterId Internal identifier X coordinate on array Y coordinate on array Spot diameter Q(Image.Constant) Q(Image.Variable) Q(Fit.Constant) Q(Fit.Variable) Fit Correction QM Spot Quality Overshining Correction VALUE Reporters flagged have been excluded from the analysis
sigenae.org:F:-4609 15483 28657.7 17246.8 300 207.308 285.222 196.125 257.883 0.00768379 0 0.901901 0 0.269565561 0
sigenae.org:F:-4610 15488 19708.4 18623.9 300 265.652 178.614 268.349 181.062 0.00941044 0 0.931889 0 0.460471808 0
sigenae.org:F:-4611 15486 10663.9 18556.9 300 224.212 297.633 195.568 257.904 0.00768379 0 0.902803 0 0.234969228 0
sigenae.org:F:-4612 15475 19724.3 15881.5 300 238.778 321.91 216.482 282.767 0.00768379 0 0.918072 0 0.144808393 0
sigenae.org:F:-4613 15477 28673.7 15845.3 300 2283.91 2064.74 1370.13 1285.28 0.00768379 0 0.740754 1 1.421405545 0
sigenae.org:F:-4614 15480 10659.4 17163.9 300 221.092 293.24 189.342 250.399 0.00768379 0 0.891108 0 -0.060248789 0
sigenae.org:F:-4615 15473 10684.5 15771 300 232.445 309.451 199.084 262.606 0.00768379 0 0.891246 0 0.441127033 0
sigenae.org:F:-4616 15390 19709.6 16948.6 300 3604.58 2429.96 2428.97 1664.22 0.0075727 0 0.79346 1 2.781883318 0
sigenae.org:F:-4617 15194 10683.9 14724.5 300 255.356 328.436 224.897 292.412 0.00768379 0 0.886942 0 0.242046212 0
sigenae.org:F:-4618 15386 1672 16836.4 300 230.104 306.65 204.881 268.648 0.00768379 0 0.907125 0 0.093551164 0
sigenae.org:F:-4619 15388 10675.5 16815.9 300 193.159 263.062 199.856 260.72 0.0075727 0 0.909559 0 0.011747472 0
sigenae.org:F:-4620 15339 28747.7 6547.93 300 537.929 349.19 542.505 346.293 0.00609451 0 0.953362 1 0.670570583 0
sigenae.org:F:-4621 15121 1665.01 1149.75 300 194.524 34.1166 192.695 34.4861 0.00739276 0 0.919675 1 0.001209796 0
sigenae.org:F:-4622 15123 10657.8 1143.44 300 331.678 436.398 304.239 390.399 0.00768379 0 0.923448 0 -0.046269309 0
sigenae.org:F:-4623 15125 19750.7 1246.33 300 387.288 510.789 395.087 507.768 0.00768379 0 0.928783 0 -0.069783239 0
sigenae.org:F:-4624 15127 28784.7 1267.7 300 440.56 587.238 350.486 446.047 0.00768379 0 0.872933 0 1
sigenae.org:F:-4625 15129 1651.94 2568.96 300 209.048 263.677 207.463 263.913 0.00596063 0 0.926558 0 1
sigenae.org:F:-4626 15131 10651.2 2538.28 300 306.57 404.204 281.996 363.469 0.0075727 0 0.899607 0 0.035725641 0
sigenae.org:F:-4627 15133 19733.4 2675.56 300 425.766 555.136 448.573 577.913 0.00768379 0 0.936952 0 1
sigenae.org:F:-4628 15135 28754.8 2693.68 300 370.588 493.956 298.315 382.791 0.00768379 0 0.874509 0 1

Total number of rows: 4608

Table truncated, full table size 471 Kbytes.




Supplementary data files not provided

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