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Sample GSM68880 Query DataSets for GSM68880
Status Public on Mar 27, 2007
Title sigenae.org:MBA:-719; PF_PigK_Damage_21d
Sample type RNA
 
Source name PF_PigK_Damage_21d
Organism Sus scrofa
Characteristics Origin: Longissimus dorsi
Origin: Muscle
Extracted molecule total RNA
Extraction protocol RNA extraction Qiagen Fibrous Tissue_PF
Label P33
 
Scan protocol Image scan; BZScan is a free java tool for automatic quantification of DNA microarrays with radioactive labeling.
Description PF_PigK_Damage_21d
Data processing mean of the duplicate minus mean of the membrane
 
Submission date Aug 09, 2005
Last update date Mar 27, 2007
Contact name Laurence Liaubet
E-mail(s) laurence.liaubet@inra.fr
Organization name INRA
Department Animal Genetic
Lab GenPhySE
Street address chemin de borde rouge
City Castanet tolosan
ZIP/Postal code 31326
Country France
 
Platform ID GPL2731
Series (1)
GSE3217 Gene expression profiling in skeletal muscle after the intramuscular administration of a pharmaceutical vehicle

Data table header descriptions
ID_REF ID_REF
ReporterId Internal identifier Internal indentifier of the reporter; Type: Int; Scale: Linear
X coordinate on array X coordinate on array; Type: Int; Scale: Linear
Y coordinate on array Y coordinate on array; Type: Int; Scale: Linear
Spot diameter Spot diameter; Type: Int; Scale: Linear
Q(Image.Constant) Quantification value. using fixed user-defined diameter and measured intensities; Type: Float; Scale: Linear
Q(Image.Variable) Quantification value. using variable. automatically determined diameter and measured intensities; Type: Float; Scale: Linear
Q(Fit.Constant) Quantification value. using fixed user-defined diameter and fitted intensities; Type: Float; Scale: Linear
Q(Fit.Variable) Quantification value. using variable. automatically determined diameter and fitted intensities; Type: Float; Scale: Linear
Fit Correction for local background noise correction; Type: Float; Scale: Linear
QM Quality factor; Type: Float; Scale: Linear
Spot Quality Spot Quality; Type: Float; Scale: Linear
Overshining Correction Overshining Correction; Type: Float; Scale: Linear
VALUE VALUE: mean of the duplicate minus mean of the membrane. Each membrane corresponds to a BioAssay left and a BioAssay right; Type: Float; Scale: Ln
Reporters flagged have been excluded from the analysis Flag; Type: int; Scale: Linear

Data table
ID_REF ReporterId Internal identifier X coordinate on array Y coordinate on array Spot diameter Q(Image.Constant) Q(Image.Variable) Q(Fit.Constant) Q(Fit.Variable) Fit Correction QM Spot Quality Overshining Correction VALUE Reporters flagged have been excluded from the analysis
sigenae.org:F:-4609 15483 31545.1 19956.9 300 434.597 545.055 436.757 545.895 0.0100568 0 0.919547 0 0.213581612 0
sigenae.org:F:-4610 15488 22607.7 21166.1 300 386.103 490.872 385.214 490.233 0.0108915 0 0.93382 0 0.247980571 0
sigenae.org:F:-4611 15486 13579.7 20992.6 300 352.128 388.761 354.36 390.104 0.0134904 0 0.926545 0 0.170632205 0
sigenae.org:F:-4612 15475 22669.8 18358.3 300 326.939 0 355.499 0 0.0163939 0 0.919619 0 0.050507301 0
sigenae.org:F:-4613 15477 31577.2 18566.9 300 316.749 0 355.499 0 0.0163939 0 0.870248 0 0.184380621 0
sigenae.org:F:-4614 15480 13592.6 19592.2 300 278.204 0 355.499 0 0.0163939 0 0.873504 0 0.007640233 0
sigenae.org:F:-4615 15473 13637.7 18193.1 300 306.21 0 355.499 0 0.0163939 0 0.855969 0 0.277001856 0
sigenae.org:F:-4616 15390 22635.5 19400.2 300 1416.85 743.12 898.555 477.566 0.0163939 0 0.776018 1 1.549614212 0
sigenae.org:F:-4617 15194 13637.6 17143.1 300 337.307 0 355.499 0 0.0163939 0 0.755603 0 0.193235175 0
sigenae.org:F:-4618 15386 4651.08 19084.2 300 331.959 0 355.499 0 0.0163939 0 0.909087 0 0.080674757 0
sigenae.org:F:-4619 15388 13612.8 19242.6 300 266.382 0 355.499 0 0.0163939 0 0.850974 0 -0.022895092 0
sigenae.org:F:-4620 15339 31817.4 9172.15 300 629.674 573.049 522.476 473.988 0.0163939 0 0.821786 0 0.545493118 0
sigenae.org:F:-4621 15121 4912.4 3410.1 300 374.729 493.966 373.491 495.669 0.0163939 0 0.940751 0 0.039051674 0
sigenae.org:F:-4622 15123 13896.1 3558.88 300 298.544 0 355.499 0 0.0163939 0 0.899321 0 -0.001467215 0
sigenae.org:F:-4623 15125 22913.9 3759.22 300 285.94 0 355.499 0 0.0163939 0 0.883889 0 -0.156582487 0
sigenae.org:F:-4624 15127 31877.9 3896.44 300 258.203 0 355.499 0 0.0163939 0 0.841189 0 1
sigenae.org:F:-4625 15129 4881.36 4816.08 300 487.929 634.131 405.038 534.246 0.0163939 0 0.741078 0 1
sigenae.org:F:-4626 15131 13860.5 4918.8 300 301.218 0 355.499 0 0.0163939 0 0.884703 0 0.297104924 0
sigenae.org:F:-4627 15133 22881.2 5150.22 300 325.055 0 355.499 0 0.0163939 0 0.920739 0 1
sigenae.org:F:-4628 15135 31856.1 5319.29 300 318.801 68.6263 318.182 67.9918 0.013918 0 0.943318 0 1

Total number of rows: 4608

Table truncated, full table size 447 Kbytes.




Supplementary data files not provided

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