NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM68861 Query DataSets for GSM68861
Status Public on Mar 27, 2007
Title sigenae.org:MBA:-712; PF_PigI_Damage_07d
Sample type RNA
 
Source name PF_PigI_Damage_07d
Organism Sus scrofa
Characteristics Origin: Longissimus dorsi
Origin: Muscle
Extracted molecule total RNA
Extraction protocol RNA extraction Qiagen Fibrous Tissue_PF
Label P33
 
Scan protocol Image scan; BZScan is a free java tool for automatic quantification of DNA microarrays with radioactive labeling.
Description PF_PigI_Damage_07d
Data processing mean of the duplicate minus mean of the membrane
 
Submission date Aug 09, 2005
Last update date Mar 27, 2007
Contact name Laurence Liaubet
E-mail(s) laurence.liaubet@inra.fr
Organization name INRA
Department Animal Genetic
Lab GenPhySE
Street address chemin de borde rouge
City Castanet tolosan
ZIP/Postal code 31326
Country France
 
Platform ID GPL2731
Series (1)
GSE3217 Gene expression profiling in skeletal muscle after the intramuscular administration of a pharmaceutical vehicle

Data table header descriptions
ID_REF ID_REF
ReporterId Internal identifier Internal indentifier of the reporter; Type: Int; Scale: Linear
X coordinate on array X coordinate on array; Type: Int; Scale: Linear
Y coordinate on array Y coordinate on array; Type: Int; Scale: Linear
Spot diameter Spot diameter; Type: Int; Scale: Linear
Q(Image.Constant) Quantification value. using fixed user-defined diameter and measured intensities; Type: Float; Scale: Linear
Q(Image.Variable) Quantification value. using variable. automatically determined diameter and measured intensities; Type: Float; Scale: Linear
Q(Fit.Constant) Quantification value. using fixed user-defined diameter and fitted intensities; Type: Float; Scale: Linear
Q(Fit.Variable) Quantification value. using variable. automatically determined diameter and fitted intensities; Type: Float; Scale: Linear
Fit Correction for local background noise correction; Type: Float; Scale: Linear
QM Quality factor; Type: Float; Scale: Linear
Spot Quality Spot Quality; Type: Float; Scale: Linear
Overshining Correction Overshining Correction; Type: Float; Scale: Linear
VALUE VALUE: mean of the duplicate minus mean of the membrane. Each membrane corresponds to a BioAssay left and a BioAssay right; Type: Float; Scale: Ln
Reporters flagged have been excluded from the analysis Flag; Type: int; Scale: Linear

Data table
ID_REF ReporterId Internal identifier X coordinate on array Y coordinate on array Spot diameter Q(Image.Constant) Q(Image.Variable) Q(Fit.Constant) Q(Fit.Variable) Fit Correction QM Spot Quality Overshining Correction VALUE Reporters flagged have been excluded from the analysis
sigenae.org:F:-4609 15483 32500.7 20703.6 300 334.532 431.774 339.244 433.476 0.00791088 0 0.944785 0 0.486323959 0
sigenae.org:F:-4610 15488 23617.1 21780 300 302.061 394.642 284.705 367.131 0.00791088 0 0.930434 0 0.591964401 0
sigenae.org:F:-4611 15486 14556.9 21454.7 300 201.492 275.176 209.322 274.851 0.00791088 0 0.905347 0 0.249588119 0
sigenae.org:F:-4612 15475 23696.9 19045.6 300 234.564 314.324 213.614 280.807 0.00791088 0 0.898066 0 0.193790013 0
sigenae.org:F:-4613 15477 32549 19318.7 300 718.053 939.038 563.912 710.221 0.00791088 0 0.803522 0 0.916601373 0
sigenae.org:F:-4614 15480 14596.1 20066.8 300 307.859 409.872 270.652 349.76 0.00791088 0 0.862428 0 0.545447291 0
sigenae.org:F:-4615 15473 14656.4 18682 300 286.676 380.935 272.471 352.357 0.00791088 0 0.915456 0 0.446552587 0
sigenae.org:F:-4616 15390 23650.4 20070 300 349.659 459.525 282.678 364.863 0.00791088 0 0.870509 0 0.732314226 0
sigenae.org:F:-4617 15194 14668.2 17650.7 300 330.001 425.265 275.69 357.125 0.00791088 0 0.871581 0 0.521705807 0
sigenae.org:F:-4618 15386 5678.71 19548.4 300 191.583 251.955 188.018 249.073 0.00791088 0 0.854248 0 -0.08764248 0
sigenae.org:F:-4619 15388 14602.1 19719.8 300 341.413 450.479 300.349 382.812 0.00791088 0 0.908351 0 0.424051649 0
sigenae.org:F:-4620 15339 32974 9935.22 300 375.222 292.097 375.777 291.526 0.00338888 0 0.894498 1 0.584245629 0
sigenae.org:F:-4621 15121 6034.98 3913.16 300 162.551 0 168.852 0 0.00778664 0 0.894355 0 0.05281389 0
sigenae.org:F:-4622 15123 14985.4 4121.26 300 170.305 0 171.546 0 0.00791088 0 0.892252 0 0.041915575 0
sigenae.org:F:-4623 15125 24080.3 4440.36 300 159.175 0 168.852 0 0.00778664 0 0.890496 0 -0.103016621 0
sigenae.org:F:-4624 15127 33078.8 4682.8 300 164.212 214.32 175.83 233.671 0.00778664 0 0.899575 0 1
sigenae.org:F:-4625 15129 6024.16 5324.75 300 578.929 373.58 428.422 282.948 0.00778664 0 0.842587 1 1
sigenae.org:F:-4626 15131 14955.2 5542.58 300 212.269 273.244 211.553 276.327 0.00778664 0 0.826316 0 0.077902941 0
sigenae.org:F:-4627 15133 24038.2 5860.94 300 171.259 232.505 187.548 248.029 0.00778664 0 0.900217 0 1
sigenae.org:F:-4628 15135 33041.2 6110.46 300 197.136 257.407 202.777 265.419 0.00778664 0 0.897382 0 1

Total number of rows: 4608

Table truncated, full table size 463 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap