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Sample GSM68848 Query DataSets for GSM68848
Status Public on Mar 27, 2007
Title sigenae.org:MBA:-704; PF_PigH_Damage_02d
Sample type RNA
 
Source name PF_PigH_Damage_02d
Organism Sus scrofa
Characteristics Origin: Longissimus dorsi
Origin: Muscle
Extracted molecule total RNA
Extraction protocol RNA extraction Qiagen Fibrous Tissue_PF
Label P33
 
Scan protocol Image scan; BZScan is a free java tool for automatic quantification of DNA microarrays with radioactive labeling.
Description PF_PigH_Damage_02d
Data processing mean of the duplicate minus mean of the membrane
 
Submission date Aug 09, 2005
Last update date Mar 27, 2007
Contact name Laurence Liaubet
E-mail(s) laurence.liaubet@inra.fr
Organization name INRA
Department Animal Genetic
Lab GenPhySE
Street address chemin de borde rouge
City Castanet tolosan
ZIP/Postal code 31326
Country France
 
Platform ID GPL2731
Series (1)
GSE3217 Gene expression profiling in skeletal muscle after the intramuscular administration of a pharmaceutical vehicle

Data table header descriptions
ID_REF ID_REF
ReporterId Internal identifier Internal indentifier of the reporter; Type: Int; Scale: Linear
X coordinate on array X coordinate on array; Type: Int; Scale: Linear
Y coordinate on array Y coordinate on array; Type: Int; Scale: Linear
Spot diameter Spot diameter; Type: Int; Scale: Linear
Q(Image.Constant) Quantification value. using fixed user-defined diameter and measured intensities; Type: Float; Scale: Linear
Q(Image.Variable) Quantification value. using variable. automatically determined diameter and measured intensities; Type: Float; Scale: Linear
Q(Fit.Constant) Quantification value. using fixed user-defined diameter and fitted intensities; Type: Float; Scale: Linear
Q(Fit.Variable) Quantification value. using variable. automatically determined diameter and fitted intensities; Type: Float; Scale: Linear
Fit Correction for local background noise correction; Type: Float; Scale: Linear
QM Quality factor; Type: Float; Scale: Linear
Spot Quality Spot Quality; Type: Float; Scale: Linear
Overshining Correction Overshining Correction; Type: Float; Scale: Linear
VALUE VALUE: mean of the duplicate minus mean of the membrane. Each membrane corresponds to a BioAssay left and a BioAssay right; Type: Float; Scale: Ln
Reporters flagged have been excluded from the analysis Flag; Type: int; Scale: Linear

Data table
ID_REF ReporterId Internal identifier X coordinate on array Y coordinate on array Spot diameter Q(Image.Constant) Q(Image.Variable) Q(Fit.Constant) Q(Fit.Variable) Fit Correction QM Spot Quality Overshining Correction VALUE Reporters flagged have been excluded from the analysis
sigenae.org:F:-4609 15483 32654.4 20445.2 300 344.416 456.586 348.726 456.201 0.0126183 0 0.942592 0 -0.007499558 0
sigenae.org:F:-4610 15488 23760.5 21780.5 300 513.933 685.567 386.496 498.301 0.0120332 0 0.854608 0 0.280082543 0
sigenae.org:F:-4611 15486 14726.8 21781.9 300 474.803 615.961 426.852 548.112 0.0120332 0 0.915172 0 0.431563385 0
sigenae.org:F:-4612 15475 23768.8 19024.2 300 282.306 388.147 270.646 359.612 0.0120332 0 0.933637 0 0.23244666 0
sigenae.org:F:-4613 15477 32673.4 19075.6 300 691.272 744.83 690.125 743.503 0.0120764 0 0.899435 1 1.60884511 0
sigenae.org:F:-4614 15480 14740.4 20401.5 300 375.077 505.65 329.422 430.81 0.0120332 0 0.914576 0 -0.064681833 0
sigenae.org:F:-4615 15473 14753.6 19011 300 499.751 452.389 498.143 451.464 0.0159329 0 0.9091 0 0.442382445 0
sigenae.org:F:-4616 15390 23775.2 20075 300 2011.91 1502.58 1316.52 1018.45 0.0120332 0 0.726185 1 3.952247168 0
sigenae.org:F:-4617 15194 14697.7 17956.5 300 366.427 224.947 366.291 226.721 0.0121626 0 0.92888 0 0.981893717 0
sigenae.org:F:-4618 15386 5812.01 20075.7 300 557.654 740.231 486.774 626.08 0.0120332 0 0.919006 0 0.082465428 0
sigenae.org:F:-4619 15388 14750.5 20054.8 300 425.977 559.858 387.98 500.708 0.0120332 0 0.907055 0 -0.139516002 0
sigenae.org:F:-4620 15339 32768 9651.48 300 640.668 499.611 542.467 394.818 0.0120332 0 0.757998 1 1.422581133 0
sigenae.org:F:-4621 15121 5651.54 4419.53 300 305.159 396.563 297.16 392.087 0.0120332 0 0.919269 0 0.051000848 0
sigenae.org:F:-4622 15123 14652.3 4396.75 300 307.788 404.05 306.687 404.549 0.0122064 0 0.929409 0 -0.008121372 0
sigenae.org:F:-4623 15125 23726 4414.86 300 287.766 383.828 261.971 348.486 0.0120332 0 0.917458 0 -0.134767393 0
sigenae.org:F:-4624 15127 32672.9 4372.78 300 224.511 0 260.939 0 0.0120332 0 0.912711 0 1
sigenae.org:F:-4625 15129 5677.26 5814.58 300 264.977 0 260.939 0 0.0120332 0 0.865816 0 1
sigenae.org:F:-4626 15131 14649.5 5790.08 300 214.729 0 260.939 0 0.0120332 0 0.885216 0 -0.132820835 0
sigenae.org:F:-4627 15133 23753.1 5816.6 300 278.683 370.625 291.62 384.808 0.0120332 0 0.928934 0 1
sigenae.org:F:-4628 15135 32673.3 5766.44 300 248.108 0 260.939 0 0.0120332 0 0.903741 0 1

Total number of rows: 4608

Table truncated, full table size 455 Kbytes.




Supplementary data files not provided

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