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Sample GSM68811 Query DataSets for GSM68811
Status Public on Mar 27, 2007
Title sigenae.org:MBA:-585; PF_PigD_Damage_02d
Sample type RNA
 
Source name PF_PigD_Damage_02d
Organism Sus scrofa
Characteristics Origin: Longissimus dorsi
Origin: Muscle
Extracted molecule total RNA
Extraction protocol RNA extraction Qiagen Fibrous Tissue_PF
Label P33
 
Scan protocol Image scan; BZScan is a free java tool for automatic quantification of DNA microarrays with radioactive labeling.
Description PF_PigD_Damage_02d
Data processing mean of the duplicate minus mean of the membrane
 
Submission date Aug 09, 2005
Last update date Mar 27, 2007
Contact name Laurence Liaubet
E-mail(s) laurence.liaubet@inra.fr
Organization name INRA
Department Animal Genetic
Lab GenPhySE
Street address chemin de borde rouge
City Castanet tolosan
ZIP/Postal code 31326
Country France
 
Platform ID GPL2731
Series (1)
GSE3217 Gene expression profiling in skeletal muscle after the intramuscular administration of a pharmaceutical vehicle

Data table header descriptions
ID_REF ID_REF
ReporterId Internal identifier Internal indentifier of the reporter; Type: Int; Scale: Linear
X coordinate on array X coordinate on array; Type: Int; Scale: Linear
Y coordinate on array Y coordinate on array; Type: Int; Scale: Linear
Spot diameter Spot diameter; Type: Int; Scale: Linear
Q(Image.Constant) Quantification value. using fixed user-defined diameter and measured intensities; Type: Float; Scale: Linear
Q(Image.Variable) Quantification value. using variable. automatically determined diameter and measured intensities; Type: Float; Scale: Linear
Q(Fit.Constant) Quantification value. using fixed user-defined diameter and fitted intensities; Type: Float; Scale: Linear
Q(Fit.Variable) Quantification value. using variable. automatically determined diameter and fitted intensities; Type: Float; Scale: Linear
Fit Correction for local background noise correction; Type: Float; Scale: Linear
QM Quality factor; Type: Float; Scale: Linear
Spot Quality Spot Quality; Type: Float; Scale: Linear
Overshining Correction Overshining Correction; Type: Float; Scale: Linear
VALUE VALUE: mean of the duplicate minus mean of the membrane. Each membrane corresponds to a BioAssay left and a BioAssay right; Type: Float; Scale: Ln
Reporters flagged have been excluded from the analysis Flag; Type: int; Scale: Linear

Data table
ID_REF ReporterId Internal identifier X coordinate on array Y coordinate on array Spot diameter Q(Image.Constant) Q(Image.Variable) Q(Fit.Constant) Q(Fit.Variable) Fit Correction QM Spot Quality Overshining Correction VALUE Reporters flagged have been excluded from the analysis
sigenae.org:F:-4609 15483 29776.6 19993.7 300 187.579 246.741 169.906 221.777 0.00551567 0 0.894194 0 1.228081319 0
sigenae.org:F:-4610 15488 20772.3 21345 300 209.789 151.022 217.578 154.592 0.00573912 0 0.918703 0 0.759662219 0
sigenae.org:F:-4611 15486 11630.1 21395.8 300 176.087 229.3 176.583 228.929 0.00603547 0 0.917399 0 0.77560128 0
sigenae.org:F:-4612 15475 20758.5 18574.7 300 177.61 237.331 175.615 227.673 0.00551567 0 0.896849 0 0.675870041 0
sigenae.org:F:-4613 15477 29770.7 18585.7 300 333.24 415.015 332.565 416.605 0.00582192 0 0.922759 0 1.385355528 0
sigenae.org:F:-4614 15480 11603.3 19987.8 300 161.021 193.748 158.384 193.093 0.00511568 0 0.905802 0 0.842220881 0
sigenae.org:F:-4615 15473 11620.2 18601.3 300 502.308 393.816 503.893 389.83 0.00506907 0 0.953058 1 1.099283464 0
sigenae.org:F:-4616 15390 20766.8 19624.8 300 4352.13 4846.11 5088.3 5782.51 0.00559929 0 0.881387 1 2.539009618 0
sigenae.org:F:-4617 15194 11624.9 17540.2 300 281.911 160.662 285.668 158.806 0.00616767 0 0.935175 1 0.651329653 0
sigenae.org:F:-4618 15386 2580.51 19623 300 419.173 552.303 308.86 386.025 0.00559929 1.98376 0.839331 0 0.702250492 0
sigenae.org:F:-4619 15388 11624.1 19647 300 143.31 195.417 138.177 182.53 0.00551567 0 0.893756 0 0.782924331 0
sigenae.org:F:-4620 15339 29774 9225.03 300 625.806 244.928 370.203 157.399 0.00559929 0 0.742884 1 0.387682823 0
sigenae.org:F:-4621 15121 2435.88 3984.46 300 174.226 204.267 171.434 199.134 0.0059901 0 0.909314 0 0.044407591 0
sigenae.org:F:-4622 15123 11552.3 4048.32 300 147.637 196.03 142.836 188.427 0.00559929 0 0.900598 0 0.080149123 0
sigenae.org:F:-4623 15125 20668.6 4021.88 300 140.908 183.004 142.176 187.146 0.00551567 0 0.901796 0 0.002628985 0
sigenae.org:F:-4624 15127 29739 3995.21 300 125.245 0 121.42 0 0.00559929 0 0.902523 0 1
sigenae.org:F:-4625 15129 2464.8 5457.77 300 161.65 89.6901 159.977 90.154 0.00606547 0 0.910353 0 1
sigenae.org:F:-4626 15131 11566.1 5437.24 300 164.549 215.203 138.704 182.331 0.00551567 0 0.869487 0 -0.175358874 0
sigenae.org:F:-4627 15133 20676.4 5449.95 300 170.32 228.746 175.224 225.685 0.00551567 0 0.910621 0 1
sigenae.org:F:-4628 15135 29745 5423.47 300 142.135 83.3349 141.919 82.6199 0.00583823 0 0.900586 0 1

Total number of rows: 4608

Table truncated, full table size 480 Kbytes.




Supplementary data files not provided

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