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Sample GSM68807 Query DataSets for GSM68807
Status Public on Mar 27, 2007
Title sigenae.org:MBA:-485; PF_PigC_Damage_21d
Sample type RNA
 
Source name PF_PigC_Damage_21d
Organism Sus scrofa
Characteristics Origin: Longissimus dorsi
Origin: Muscle
Extracted molecule total RNA
Extraction protocol RNA extraction Qiagen Fibrous Tissue_PF
Label P33
 
Scan protocol Image scan; BZScan is a free java tool for automatic quantification of DNA microarrays with radioactive labeling.
Description PF_PigC_Damage_21d
Data processing mean of the duplicate minus mean of the membrane
 
Submission date Aug 09, 2005
Last update date Mar 27, 2007
Contact name Laurence Liaubet
E-mail(s) laurence.liaubet@inra.fr
Organization name INRA
Department Animal Genetic
Lab GenPhySE
Street address chemin de borde rouge
City Castanet tolosan
ZIP/Postal code 31326
Country France
 
Platform ID GPL2731
Series (1)
GSE3217 Gene expression profiling in skeletal muscle after the intramuscular administration of a pharmaceutical vehicle

Data table header descriptions
ID_REF ID_REF
ReporterId Internal identifier Internal indentifier of the reporter; Type: Int; Scale: Linear
X coordinate on array X coordinate on array; Type: Int; Scale: Linear
Y coordinate on array Y coordinate on array; Type: Int; Scale: Linear
Spot diameter Spot diameter; Type: Int; Scale: Linear
Q(Image.Constant) Quantification value. using fixed user-defined diameter and measured intensities; Type: Float; Scale: Linear
Q(Image.Variable) Quantification value. using variable. automatically determined diameter and measured intensities; Type: Float; Scale: Linear
Q(Fit.Constant) Quantification value. using fixed user-defined diameter and fitted intensities; Type: Float; Scale: Linear
Q(Fit.Variable) Quantification value. using variable. automatically determined diameter and fitted intensities; Type: Float; Scale: Linear
Fit Correction for local background noise correction; Type: Float; Scale: Linear
QM Quality factor; Type: Float; Scale: Linear
Spot Quality Spot Quality; Type: Float; Scale: Linear
Overshining Correction Overshining Correction; Type: Float; Scale: Linear
VALUE VALUE: mean of the duplicate minus mean of the membrane. Each membrane corresponds to a BioAssay left and a BioAssay right; Type: Float; Scale: Ln
Reporters flagged have been excluded from the analysis Flag; Type: int; Scale: Linear

Data table
ID_REF ReporterId Internal identifier X coordinate on array Y coordinate on array Spot diameter Q(Image.Constant) Q(Image.Variable) Q(Fit.Constant) Q(Fit.Variable) Fit Correction QM Spot Quality Overshining Correction VALUE Reporters flagged have been excluded from the analysis
sigenae.org:F:-4609 15483 29997.6 18525.3 300 146.308 0 172.701 0 0.00796414 0 0.885055 0 -0.34772245224601 0
sigenae.org:F:-4610 15488 21025.2 19941.7 300 253.426 220.439 251.571 219.773 0.00406066 0 0.918322 1 0.114313164367361 0
sigenae.org:F:-4611 15486 11925.5 19941.1 300 166.599 77.3254 168.104 74.9227 0.00514772 0 0.909801 1 -0.256349441571742 0
sigenae.org:F:-4612 15475 21030.1 17148.4 300 440.327 637.649 271.216 345.434 0.00796414 0.165981 0.7133 0 0.499116578895504 0
sigenae.org:F:-4613 15477 30013.1 17137.4 300 1245.56 1358.51 1246.75 1365.68 0.00133621 0 0.930781 1 1.44026393973978 0
sigenae.org:F:-4614 15480 11907.2 18547 300 169.91 228.874 192.813 255.029 0.00796414 0 0.853755 0 -0.361163995111687 0
sigenae.org:F:-4615 15473 11922.8 17153.6 300 395.555 200.103 323.767 155.225 0.00796414 0 0.885548 1 0.740995502657122 0
sigenae.org:F:-4616 15390 21015.1 18195.9 300 9313.32 10643.1 6061.1 6891.35 0.00796414 0 0.787517 0 3.73810642799063 0
sigenae.org:F:-4617 15194 11924.9 16115.7 300 350.001 255.097 350.419 252.778 0.00384395 0 0.923439 1 0.453295565607144 0
sigenae.org:F:-4618 15386 2853.82 18272.6 300 187.618 249.696 189.124 250.205 0.00796414 0 0.900467 0 -0.279818180148662 0
sigenae.org:F:-4619 15388 11914.7 18198.5 300 139.987 0 172.701 0 0.00796414 0 0.859215 0 -0.554558183401448 0
sigenae.org:F:-4620 15339 30000.7 7776.57 300 2888.36 1465.77 1647.04 930.916 0.00796414 0 0.725876 1 2.44221407741167 0
sigenae.org:F:-4621 15121 2737.04 2685.75 300 594 463.975 596.46 460.411 0.00536201 0 0.896501 1 0.413380028366388 0
sigenae.org:F:-4622 15123 11800.2 2627.96 300 407.577 204.382 331.921 159.527 0.00796414 0 0.866674 1 0.515041947527759 0
sigenae.org:F:-4623 15125 20909.9 2621.55 300 158.553 202.777 178.426 237.214 0.00796414 0 0.875089 0 -0.341820473028178 0
sigenae.org:F:-4624 15127 30003.6 2581.59 300 165.409 0 172.701 0 0.00796414 0 0.918484 0 1
sigenae.org:F:-4625 15129 2729.18 4057.24 300 1112.36 497.466 685.105 328.754 0.00796414 0 0.762282 1 1
sigenae.org:F:-4626 15131 11814.4 4002.55 300 188.318 51.7612 199.844 51.5424 0.00758919 0 0.919525 0 -0.156872586883082 0
sigenae.org:F:-4627 15133 20901.5 3985.96 300 372.911 529.566 303.577 387.055 0.00796414 0.149488 0.868739 0 1
sigenae.org:F:-4628 15135 30000.5 3946.72 300 254.244 333.71 266.227 341 0.00796414 0 0.925744 0 1

Total number of rows: 4608

Table truncated, full table size 483 Kbytes.




Supplementary data files not provided
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