|
Status |
Public on Feb 28, 2011 |
Title |
MSS-5 |
Sample type |
RNA |
|
|
Source name |
Colorectal, MSS/HLA-
|
Organism |
Homo sapiens |
Characteristics |
tissue: colorectal cancer microsatellite phenotype: microsatellite stability hla expression: HLA-
|
Extracted molecule |
total RNA |
Extraction protocol |
RNeasy mini kit (Qiagen) + QIAshredder.
|
Label |
Biotin
|
Label protocol |
GeneChip 3’ IVT Express kit.
|
|
|
Hybridization protocol |
Samples were hybridized to Affymetrix HT HG-133+PM 24 Array Plate GeneChips using the Affymetrix standard hybridization protocol.
|
Scan protocol |
Gene Titan System.
|
Description |
MSS/HLA-
|
Data processing |
Data were normalized using the RMA method included in the R Bioconductor package limma.
|
|
|
Submission date |
Feb 27, 2011 |
Last update date |
Feb 28, 2011 |
Contact name |
Francisco Ruiz-Cabello |
Organization name |
Hospital Universitario Virgen de las Nieves
|
Street address |
Avenida Fuerzas Armadas 2
|
City |
Granada |
ZIP/Postal code |
18014 |
Country |
Spain |
|
|
Platform ID |
GPL13158 |
Series (1) |
GSE27544 |
Genome-wide profiling characterizes CRCs with genetic instability and specific routes to HLA class I loss and immunoescape |
|