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Sample GSM610706 Query DataSets for GSM610706
Status Public on Mar 23, 2012
Title HS_04
Sample type genomic
 
Source name HS_04
Organism Homo sapiens
Characteristics geographical origin: Brazil
genger: Male
histological type: Carcinoma
tnm: T3N1M0
tp53 mutation: R337H
virilization: Yes
cushing syndrome: No
treatment: Surgery+Chemotherapy
follow-up (months): DFP (13)
Extracted molecule genomic DNA
Extraction protocol Proteinase K method. The detailed protocol can be found in PMID:18786438.
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description childhood adrenocortical tumor
Data processing standard Illumina protocol
 
Submission date Oct 19, 2010
Last update date Mar 23, 2012
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL6986
Series (3)
GSE24804 SNP data from 13 childhood adrenocortical tumours from Brazilian patients and 6 matched normal samples
GSE32206 Identity by descent mapping of founder mutations in cancer using high-resolution tumor SNP data
GSE35066 SNP array profiling of childhood adrenocortical tumours reveals distinct pathways of tumourigenesis and highlights candidate driver genes

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs10000010-126_B_F_IFB1153208421:0 0.0809 0.0027 3881 73 0.94 0.007 0.947 0.005
rs10000023-126_B_F_IFB1153358872:0 -0.0536 0.4908 4502 4098 1.126 1.081 2.207 0.487
rs10000030-120_B_R_IFB1137703207:0 -0.5213 0.985 113 2289 0.016 0.505 0.521 0.98
rs1000007-123_T_F_IFB1152225452:0 0.0373 0.624 1847 3606 0.388 0.777 1.164 0.705
rs10000092-123_T_R_IFB1153358875:0 -0.5028 0.683 1002 1619 0.235 0.426 0.661 0.679
rs10000121-126_B_R_IFB1136471760:0 -0.4837 0.4677 611 813 0.162 0.239 0.401 0.622
rs1000014-126_B_R_IFB1136184019:0 0.2713 0.9953 632 7959 0.112 1.658 1.769 0.957
rs10000141-126_T_F_IFB1137734411:0 -0.6967 0.5477 923 1886 0.227 0.415 0.642 0.681
rs1000016-126_B_R_IFB1156563530:0 0.2184 0 7776 207 1.718 0.016 1.734 0.006
rs10000169-119_T_R_IFB1135612081:0 0.0442 0 5034 62 1.083 0.002 1.085 0.001
rs1000022-126_B_F_IFB1135126284:0 0.042 0.9907 245 3344 0.039 0.893 0.932 0.972
rs10000272-126_T_R_IFB1136539894:0 -0.0251 0 5746 100 1.656 0.009 1.665 0.004
rs10000282-121_T_R_IFB1136743500:0 -0.5174 0.9982 141 3309 0.018 0.812 0.83 0.986
rs10000300-126_T_R_IFB1152704058:0 -0.5784 0.5829 1023 1561 0.211 0.322 0.534 0.63
rs1000031-123_B_F_IFB1135583872:0 0.0051 0.8711 1587 6313 0.317 1.329 1.646 0.851
rs1000032-126_B_R_IFB1136145093:0 -0.1801 0.4865 1575 3351 0.343 0.696 1.038 0.709
rs10000388-126_B_F_IFB1135932472:0 0.6399 0.5652 3451 5052 0.898 1.195 2.093 0.59
rs1000040-126_T_F_IFB1152704061:0 0.2092 0 5386 182 1.2 0.022 1.222 0.012
rs1000041-126_T_F_IFB1153889147:0 0.0778 0.9874 436 5321 0.074 1.423 1.496 0.967
rs10000432-126_T_R_IFB1135756304:0 -0.0861 1 143 3422 0.011 0.747 0.758 0.99

Total number of rows: 370404

Table truncated, full table size 28800 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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