|
Status |
Public on Dec 14, 2022 |
Title |
INS1E cells siRNA control replicate 1 |
Sample type |
SRA |
|
|
Source name |
INS1E cells
|
Organism |
Rattus norvegicus |
Characteristics |
cell line: INS1E sirna: siRNA control
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA extraction was performed using RNeasy Mini Kit (Qiagen) following the manufacturer's instructions. Illumina strand-specific Strand-specific polyA-selected
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2500 |
|
|
Description |
polyA-selected RNA
|
Data processing |
Raw reads were mapped with vast-tools align v2.5.1. Assembly: hg38 (GRCh38), mm10 (GRCm38), rn6 (Rnor_6.0) Supplementary files format and content: *.cRPKM.txt: Files with raw read counts and cRPKMs for each human, mouse or rat gene in Ensembl.
|
|
|
Submission date |
Mar 17, 2022 |
Last update date |
Dec 17, 2022 |
Contact name |
Manuel Irimia |
E-mail(s) |
mirimia@gmail.com
|
Phone |
+34933160212
|
Organization name |
Centre for Genomic Regulation
|
Department |
Systems Biology Unit
|
Street address |
88 Dr. Aiguader
|
City |
Barcelona |
State/province |
Barcelona |
ZIP/Postal code |
08003 |
Country |
Spain |
|
|
Platform ID |
GPL18694 |
Series (1) |
GSE198906 |
Control of pancreatic islet function and glucose homeostasis by a novel microexon program misregulated in type 2 diabetes |
|
Relations |
BioSample |
SAMN26753116 |
SRA |
SRX14495404 |