|
| Status |
Public on Dec 14, 2022 |
| Title |
HeLa cells with SRRM3 transgene, high dox induced |
| Sample type |
SRA |
| |
|
| Source name |
HeLa cells
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: HeLa
transgene: SRRM3 transgene, high dox induced
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA extraction was performed using RNeasy Mini Kit (Qiagen) following the manufacturer's instructions.
Illumina strand-specific
Strand-specific polyA-selected
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
polyA-selected RNA
|
| Data processing |
Raw reads were mapped with vast-tools align v2.5.1.
Assembly: hg38 (GRCh38), mm10 (GRCm38), rn6 (Rnor_6.0)
Supplementary files format and content: *.cRPKM.txt: Files with raw read counts and cRPKMs for each human, mouse or rat gene in Ensembl.
|
| |
|
| Submission date |
Mar 17, 2022 |
| Last update date |
Dec 17, 2022 |
| Contact name |
Manuel Irimia |
| E-mail(s) |
mirimia@gmail.com
|
| Phone |
+34933160212
|
| Organization name |
Centre for Genomic Regulation
|
| Department |
Systems Biology Unit
|
| Street address |
88 Dr. Aiguader
|
| City |
Barcelona |
| State/province |
Barcelona |
| ZIP/Postal code |
08003 |
| Country |
Spain |
| |
|
| Platform ID |
GPL16791 |
| Series (1) |
| GSE198906 |
Control of pancreatic islet function and glucose homeostasis by a novel microexon program misregulated in type 2 diabetes |
|
| Relations |
| BioSample |
SAMN26753133 |
| SRA |
SRX14495387 |
