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Sample GSM53112 Query DataSets for GSM53112
Status Public on Jul 01, 2005
Title Cervix - 29273
Sample type RNA
 
Source name Cervix
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.2
Patient Age: 20-30
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Have you ever been diagnosed as having HPV on your PAP smear?: No
Primary Site: Cervix
Histology: Adenocarcinoma, NOS
 
Submission date Jun 30, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2299.6 P 0.000754
AFFX-BioB-M_at 2933.4 P 6e-005
AFFX-BioB-3_at 2102.9 P 0.000147
AFFX-BioC-5_at 6566.6 P 4.4e-005
AFFX-BioC-3_at 7063.3 P 5.2e-005
AFFX-BioDn-5_at 14904.7 P 4.4e-005
AFFX-BioDn-3_at 23550.3 P 4.4e-005
AFFX-CreX-5_at 66075.8 P 4.4e-005
AFFX-CreX-3_at 73511.9 P 4.4e-005
AFFX-DapX-5_at 1760.6 P 7e-005
AFFX-DapX-M_at 3183.8 P 0.000662
AFFX-DapX-3_at 4737.1 P 5.2e-005
AFFX-LysX-5_at 241.4 P 0.001248
AFFX-LysX-M_at 448.1 P 0.036569
AFFX-LysX-3_at 807.8 P 6e-005
AFFX-PheX-5_at 225.6 P 4.4e-005
AFFX-PheX-M_at 343 P 0.011384
AFFX-PheX-3_at 599.5 P 0.000662
AFFX-ThrX-5_at 400.6 P 0.001248
AFFX-ThrX-M_at 503.1 P 0.00011

Total number of rows: 54675

Table truncated, full table size 1457 Kbytes.




Supplementary file Size Download File type/resource
GSM53112.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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