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Sample GSM53044 Query DataSets for GSM53044
Status Public on Jul 01, 2005
Title Small intestine - 1226
Sample type RNA
 
Source name Small intestine
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 6
Clinical Question: Stage
Clinical Value: No AJCC Staging Scheme for this site/histology
Clinical Question: T
Clinical Value: Tumor size is 1cm-2cm
Clinical Question: N
Clinical Value: Lymph nodes positive
Clinical Question: M
Clinical Value: No distant metastatic disease
Primary Site: Small intestine
Clinical Question: Histology
Clinical Value: Neuroendocrine carcinoma, NOS
 
Submission date Jun 30, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2073.7 P 0.000754
AFFX-BioB-M_at 2880.3 P 7e-005
AFFX-BioB-3_at 1844 P 0.000169
AFFX-BioC-5_at 5685.5 P 5.2e-005
AFFX-BioC-3_at 7036.1 P 4.4e-005
AFFX-BioDn-5_at 15035.9 P 4.4e-005
AFFX-BioDn-3_at 22570.9 P 4.4e-005
AFFX-CreX-5_at 61527.3 P 4.4e-005
AFFX-CreX-3_at 69209.5 P 4.4e-005
AFFX-DapX-5_at 3024.1 P 6e-005
AFFX-DapX-M_at 6009.5 P 0.000169
AFFX-DapX-3_at 9368.5 P 4.4e-005
AFFX-LysX-5_at 316.7 P 0.000581
AFFX-LysX-M_at 764.1 P 0.00762
AFFX-LysX-3_at 1680.4 P 6e-005
AFFX-PheX-5_at 427.9 P 0.000127
AFFX-PheX-M_at 658.7 P 0.000857
AFFX-PheX-3_at 1082.7 P 9.5e-005
AFFX-ThrX-5_at 895.1 P 0.000972
AFFX-ThrX-M_at 1237.5 P 5.2e-005

Total number of rows: 54675

Table truncated, full table size 1458 Kbytes.




Supplementary file Size Download File type/resource
GSM53044.CEL.gz 8.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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