|
| Status |
Public on Jul 06, 2021 |
| Title |
RB2 (3.5K BAC-CGH) |
| Sample type |
genomic |
| |
|
| Source name |
retinoblastoma sample RB2
|
| Organism |
Homo sapiens |
| Characteristics |
sample_id_for_geo: SAMPLE 2
tissue: retinoblastoma
|
| Treatment protocol |
NA
|
| Growth protocol |
NA
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
For DNA extraction, samples were first incubated in a lysis buffer with proteinase K, recombinant. They were next incubated with RNAse A. DNA was then extracted using a standard phenol-chloroform protocol
|
| Label |
Cy5
|
| Label protocol |
Cy5
|
| |
|
| Hybridization protocol |
see platform's Manufacture protocol
|
| Scan protocol |
ScanArray 4000 (Packard Bioscience)
|
| Description |
3.5K BAC CGH array data for retinoblastoma samples
Sample name: SAMPLE 2
|
| Data processing |
HG19 version of the genome used, data processed with GLAD algorithm (Hupé et al, Bioinformatics, 2004)
Raw data matrix : raw log ratio values, Processed data matrix: Gap-smoothed log ratio values
|
| |
|
| Submission date |
Mar 01, 2021 |
| Last update date |
Feb 11, 2022 |
| Contact name |
Elodie chapeaublanc |
| E-mail(s) |
elodie.chapeaublanc@pasteur.fr
|
| Organization name |
Institut Curie
|
| Department |
UMR 144
|
| Lab |
Equipe Radvanyi
|
| Street address |
26 rue d'ulm
|
| City |
paris |
| ZIP/Postal code |
75248 |
| Country |
France |
| |
|
| Platform ID |
GPL18861 |
| Series (2) |
| GSE58784 |
Retinoblastoma genome variation profiling by genome tiling array |
| GSE58785 |
Pan-genomic study of primary human retinoblastoma samples |
|
