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Sample GSM46858

Query DataSets for GSM46858

Status

Public on Mar 31, 2005

Title

Kidney - 22229

Sample type

RNA

Source name

Kidney

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma

Submission date

Mar 31, 2005

Last update date

Aug 28, 2018

Contact name

Erin Curley

E-mail(s)

ecurley@intgen.org

Phone

602-343-8808

Fax

602-343-8440

URL

http://www.intgen.org

Organization name

IGC

Department

Lab

expO

Street address

445 N. 5th Street

City

Phoenix

State/province

ZIP/Postal code

85004

Country

USA

Platform ID

GPL570

Series (1)

GSE2109

Expression Project for Oncology (expO)

Relations

Reanalyzed by

GSE64985

Reanalyzed by

GSE119087

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS5, normalized
ABS_CALL	The detection value calculated by the MAS5
DETECTION P-VALUE	The detection p-value calculated by the MAS5

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	596.9	P	0.000662
AFFX-BioB-M_at	917.4	P	4.4e-005
AFFX-BioB-3_at	498.9	P	9.5e-005
AFFX-BioC-5_at	1753.9	P	4.4e-005
AFFX-BioC-3_at	2181.6	P	4.4e-005
AFFX-BioDn-5_at	4485.2	P	4.4e-005
AFFX-BioDn-3_at	7965.3	P	4.4e-005
AFFX-CreX-5_at	19534.8	P	5.2e-005
AFFX-CreX-3_at	24723.7	P	4.4e-005
AFFX-DapX-5_at	556.8	P	0.00011
AFFX-DapX-M_at	1477.7	P	0.000662
AFFX-DapX-3_at	1880.2	P	5.2e-005
AFFX-LysX-5_at	115.7	P	0.004998
AFFX-LysX-M_at	184.4	P	0.012547
AFFX-LysX-3_at	374.5	P	0.000147
AFFX-PheX-5_at	82.2	P	0.003595
AFFX-PheX-M_at	172.9	P	0.000856
AFFX-PheX-3_at	264	P	0.009337
AFFX-ThrX-5_at	181	P	0.002556
AFFX-ThrX-M_at	256.1	P	5.2e-005

Total number of rows: 54675

Table truncated, full table size 1446 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM46858.CEL.gz	8.3 Mb	(ftp)(http)	CEL
Processed data included within Sample table