|
| Status |
Public on Oct 15, 2009 |
| Title |
Patient1_lesion |
| Sample type |
RNA |
| |
|
| Source name |
Human skin biopsy
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: skin
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
Patient 1_lesion
|
| Data processing |
The data were normalised using quantile normalisation with IlluminaGUI in R
|
| |
|
| Submission date |
Oct 13, 2009 |
| Last update date |
Oct 13, 2009 |
| Contact name |
Tao Peng |
| E-mail(s) |
tpeng@u.washington.edu
|
| Phone |
206-667-5861
|
| Organization name |
University of Washington
|
| Department |
Medicine
|
| Street address |
1100 Fairview Ave N/FHCRC/E5-110
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109 |
| Country |
USA |
| |
|
| Platform ID |
GPL6255 |
| Series (1) |
| GSE18527 |
Genome-wide analysis of skin biopsies during the mucocutaneous HSV-2 reactivation |
|
