|
| Status |
Public on Jan 05, 2010 |
| Title |
VARI_053T |
| Sample type |
RNA |
| |
|
| Source name |
Homo Sapiens
|
| Organism |
Homo sapiens |
| Characteristics |
subtype: clear cell
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
10 ug of Qiagen-purified total RNA
|
| |
|
| Hybridization protocol |
GeneChips were washed and stained in the Affymetrix hybridization oven 640.
|
| Scan protocol |
GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
|
| Description |
CAD
SETD2
SMARCA4
SNX2
VHL
|
| Data processing |
The data were analyzed with custom CDF environments created by the MBNI - The version 11 entrez gene ID CDF was used.
|
| |
|
| Submission date |
Aug 26, 2009 |
| Last update date |
Oct 21, 2011 |
| Contact name |
Karl Dykema |
| Organization name |
Van Andel Institute
|
| Lab |
Lab of Computational Biology
|
| Street address |
333 Bostwick Ave. NE
|
| City |
Grand Rapids |
| State/province |
MI |
| ZIP/Postal code |
49503 |
| Country |
USA |
| |
|
| Platform ID |
GPL9101 |
| Series (2) |
| GSE17816 |
Somatic Mutation Screen of Clear Cell RCC I |
| GSE17895 |
Somatic Mutation Screen of Clear Cell RCC |
|
| Relations |
| Reanalyzed by |
GSE33093 |
