|
| Status |
Public on Jun 26, 2020 |
| Title |
Sham_4wk_21_Inc_YES_BG_96 |
| Sample type |
SRA |
| |
|
| Source name |
Islets of Langerhans
|
| Organism |
Rattus norvegicus |
| Characteristics |
strain: Lewis Rats
average bg pre-sac: 96
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
miRNeasy Qiagen
Wafergreen Directional
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
4-5 Week Lewis Rat
|
| Data processing |
fastqc
subread-buildindex
subread-align
featureCounts
limma
Genome_build: voom
Supplementary_files_format_and_content: Rnor6 ENSEMBLE v93
|
| |
|
| Submission date |
Jul 26, 2019 |
| Last update date |
Jun 26, 2020 |
| Contact name |
Aref Ebrahimi |
| E-mail(s) |
aref.ebrahimi@joslin.harvard.edu
|
| Phone |
617-874-7266
|
| Organization name |
Harvard Medical School - Joslin
|
| Department |
Islet Cell and Regenerative Biology
|
| Lab |
Weir
|
| Street address |
1 Joslin Pl
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02215 |
| Country |
USA |
| |
|
| Platform ID |
GPL18694 |
| Series (1) |
| GSE134963 |
4 Week Post Partical Pancreatectomy |
|
| Relations |
| BioSample |
SAMN12374423 |
| SRA |
SRX6601512 |
