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GEO accession:
Sample GSM39104
Query DataSets for GSM39104
Status
Public on Jan 22, 2005
Title
SeroNeg-1
Sample type
RNA
Source name
Human PBMC
Organism
Homo sapiens
Extracted molecule
total RNA
Description
HIV seronegative sample
Keywords = HIV, Human, PBMC, in vivo
Submission date
Jan 19, 2005
Last update date
May 27, 2005
Contact name
Maryanne Vahey
E-mail(s)
mvahey@hivresearch.org
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL201
Series (1)
GSE2171
HIV-1 infection in human PBMCs in vivo
Data table header descriptions
ID_REF
Affymetrix ID
VALUE
signal intensity output from MAS5.0 with target signal intensity being set to 500
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
2270.3
P
0.000581
AFFX-BioB-M_at
3101.9
P
0.000070
AFFX-BioB-3_at
1667.6
P
0.000169
AFFX-BioC-5_at
6980.4
P
0.000070
AFFX-BioC-3_at
2847.3
P
0.000044
AFFX-BioDn-5_at
6639.4
P
0.000044
AFFX-BioDn-3_at
33107.1
P
0.000052
AFFX-CreX-5_at
54997.7
P
0.000044
AFFX-CreX-3_at
68021.8
P
0.000044
AFFX-HUMISGF3A/M97935_5_at
182.8
P
0.021902
AFFX-HUMISGF3A/M97935_MA_at
862.2
P
0.009337
AFFX-HUMISGF3A/M97935_MB_at
397.7
P
0.000754
AFFX-HUMISGF3A/M97935_3_at
1038.1
P
0.000258
AFFX-HUMRGE/M10098_5_at
5971.3
P
0.000044
AFFX-HUMRGE/M10098_M_at
1629.1
P
0.000095
AFFX-HUMRGE/M10098_3_at
3025.1
P
0.000070
AFFX-HUMGAPDH/M33197_5_at
10334.7
P
0.000044
AFFX-HUMGAPDH/M33197_M_at
13636.0
P
0.000070
AFFX-HUMGAPDH/M33197_3_at
13712.5
P
0.000044
AFFX-HSAC07/X00351_5_at
20795.1
P
0.000044
Total number of rows:
8793
Table truncated, full table size
237 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM39104.cel.gz
1.2 Mb
(ftp)
(http)
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