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Sample GSM368262 Query DataSets for GSM368262
Status Public on Feb 12, 2009
Title THYGYLM18
Sample type RNA
 
Source name Thyroid gland,Youli,male
Organism Sus scrofa
Characteristics tissue: Thyroid gland
breed: Youli
sex: male
Treatment protocol At necropsy, samples of 16 tissues were collected, snap frozen in liquid nitrogen and stored at -80 ºC, until de RNA extraction.
Growth protocol Pigs with one month of age were housed simultaneously, fed the same diets during the fattening period, that lasted two months.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from 100 mg tissue using the RiboPure™ kit (Ambion, Austin, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol The hybridization was done according to Affymetrix standard protocols.
Scan protocol Standard Affymetrix protocol
Description Thyroid gland,Youli,male
Data processing Microarray expression data were generated with GeneChip Operating Software (GCOS)
 
Submission date Feb 06, 2009
Last update date Feb 12, 2009
Contact name Miguel Perez-Enciso
E-mail(s) miguel.perez@uab.es
Phone +34935814225
URL http://www.icrea.es
Organization name Universitat Autonoma Barcelona
Department Animal Science
Lab Animal Breeding
Street address Veterinary School
City Bellaterra
ZIP/Postal code 08193
Country Spain
 
Platform ID GPL3533
Series (1)
GSE14739 Impact of breed and sex on porcine endocrine transcriptome: A Bayesian biometrical analysis

Data table header descriptions
ID_REF
VALUE All CEL files were normalized simultaneously with the GCRMA procedure

Data table
ID_REF VALUE
AFFX-BioB-3_at 8.397477477
AFFX-BioB-5_at 8.285578759
AFFX-BioB-M_at 9.081578205
AFFX-BioC-3_at 10.40588578
AFFX-BioC-5_at 9.420256094
AFFX-BioDn-3_at 11.79923294
AFFX-BioDn-5_at 11.79980312
AFFX-CreX-3_at 14.20378965
AFFX-CreX-5_at 14.24764855
AFFX-DapX-3_at 8.430579017
AFFX-DapX-5_at 7.257347674
AFFX-DapX-M_at 8.218078184
AFFX-LysX-3_at 5.137469164
AFFX-LysX-5_at 3.155709387
AFFX-LysX-M_at 2.746154257
AFFX-PheX-3_at 3.782907277
AFFX-PheX-5_at 3.25667092
AFFX-PheX-M_at 4.491893255
AFFX-r2-Bs-dap-3_at 9.475216169
AFFX-r2-Bs-dap-5_at 7.69389746

Total number of rows: 24123

Table truncated, full table size 698 Kbytes.




Supplementary file Size Download File type/resource
GSM368262.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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