|
Status |
Public on Jan 01, 2009 |
Title |
SHR - 4 week old - biol rep 2 |
Sample type |
RNA |
|
|
Source name |
isolated glomeruli
|
Organism |
Rattus norvegicus |
Characteristics |
non-proteinuric rat strain
|
Treatment protocol |
The animals were treated as described in Koop, K et al. Selective loss of podoplanin protein expression accompanies proteinuria and precedes alterations in podocyte morphology in a spontaneous proteinuric rat model. Am J Pathol. 2008 Aug;173(2):315-26
|
Growth protocol |
The animals were treated as described in Koop, K et al. Selective loss of podoplanin protein expression accompanies proteinuria and precedes alterations in podocyte morphology in a spontaneous proteinuric rat model. Am J Pathol. 2008 Aug;173(2):315-26
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was isolated from the glomeruli using the TRIzol (Invitrogen) method, and purified with Qiagen RNeasy mini columns (Qiagen, www.qiagen.com).
|
Label |
biotin
|
Label protocol |
Biotin-labeled cRNA was produced using the Ambion MessageAmp II-Biotin Enhanced kit (Ambion, www.ambion.com), according to the manufacturer’s instructions.
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|
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Hybridization protocol |
Hybridization and scanning were performed by the Leiden Genome Technology Center according to standard protocols (www.lgtc.com)
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Scan protocol |
Hybridization and scanning were performed by the Leiden Genome Technology Center according to standard protocols (www.lgtc.com)
|
Description |
SHR - 4 week old - biol rep 2
|
Data processing |
Preprocessing of the data was performed with the GC Robust Multiarray Average (GCRMA) package in the R-environment (www.r-project.org ; www.bioconductor.org)
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|
|
Submission date |
Dec 03, 2008 |
Last update date |
Dec 03, 2008 |
Contact name |
klaas koop |
Organization name |
Leiden University Medical Center
|
Department |
Pathology
|
Street address |
Albinusdreef 2
|
City |
Leiden |
ZIP/Postal code |
2300 RC |
Country |
Netherlands |
|
|
Platform ID |
GPL1355 |
Series (1) |
GSE13810 |
Microarray analysis of the development of proteinuria in the Dahl salt-sensitive rat |
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