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Sample GSM281148 Query DataSets for GSM281148
Status Public on Apr 12, 2008
Title Hdh-KO-27 replicate1
Sample type RNA
 
Source name MEF cells
Organism Mus musculus
Characteristics Hdh-KO-27 replicate1
Growth protocol MEF cells were cultured in 10% FBS DMEM medium
Extracted molecule total RNA
Extraction protocol total RNA were extracted followed TRIZOL protocol, then transferred to RNAeasy mini spin columns for RNA purification
Label biotin
Label protocol Biotinylated cRNA was prepared using the Illumina RNA Amplification Kit (Ambion, Inc., Austin, TX) according to the manufacturer's directions starting with ~200 ng total RNA
 
Hybridization protocol performed according to the Illumina BeadStation 500× manual (revision C)
Scan protocol Arrays were scanned with an Illumina Bead array Reader confocal scanner
Description none
Data processing the data was analyzed using Illumina's BeadStudio software(Version 3).
 
Submission date Apr 11, 2008
Last update date Apr 11, 2008
Contact name hua zhang
E-mail(s) hua.zhang@utsouthwestern.edu
Phone 2146456016
Fax 2146456018
Organization name utsw
Department physiology
Street address 5323 harry hines
City dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platform ID GPL6731
Series (1)
GSE11139 Elucidating a normal function of huntingtin by analysis of huntingtin-null mouse embryonic fibroblasts

Data table header descriptions
ID_REF
VALUE Normalized signal intensity, average normalization
BEAD_STDERR
Avg_NBEADS
Detection Pval

Data table
ID_REF VALUE BEAD_STDERR Avg_NBEADS Detection Pval
102450270 218.7104 16.19645 41 0.07242694
104200035 199.7029 12.2763 42 0.2090216
100730138 190.7001 11.90576 39 0.3221093
102320427 183.9381 15.43482 42 0.4256671
102630735 149.1164 7.586854 42 0.9243965
100450435 170.7686 9.436735 44 0.662643
101230594 132.8332 7.282859 50 0.9872935
100780541 212.78 18.10719 30 0.1041931
104200184 155.622 9.566504 45 0.8716645
105360286 177.5795 10.22213 48 0.5425667
103060411 194.7603 16.9603 26 0.2693774
100630193 129.3039 9.190998 35 0.9923761
105270286 121.8226 6.773767 45 0.9993647
101690685 171.8318 10.6839 41 0.6435832
100060180 195.7002 11.79769 43 0.2604828
107100563 163.3001 8.396719 60 0.7858958
100450451 159.9458 10.10086 31 0.8278272
100610092 152.9313 9.425997 51 0.8939009
104810452 37752.12 1311.753 42 0
6840019 12618.04 326.627 39 0

Total number of rows: 47425

Table truncated, full table size 1726 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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