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Sample GSM281144 Query DataSets for GSM281144
Status Public on Apr 12, 2008
Title Hdh-KO-16 replicate1
Sample type RNA
 
Source name MEF cells
Organism Mus musculus
Characteristics Hdh-KO-16 replicate1
Growth protocol MEF cells were cultured in 10% FBS DMEM medium
Extracted molecule total RNA
Extraction protocol total RNA were extracted followed TRIZOL protocol, then transferred to RNAeasy mini spin columns for RNA purification
Label biotin
Label protocol Biotinylated cRNA was prepared using the Illumina RNA Amplification Kit (Ambion, Inc., Austin, TX) according to the manufacturer's directions starting with ~200 ng total RNA
 
Hybridization protocol performed according to the Illumina BeadStation 500× manual (revision C)
Scan protocol Arrays were scanned with an Illumina Bead array Reader confocal scanner
Description none
Data processing the data was analyzed using Illumina's BeadStudio software(Version 3).
 
Submission date Apr 11, 2008
Last update date Apr 11, 2008
Contact name hua zhang
E-mail(s) hua.zhang@utsouthwestern.edu
Phone 2146456016
Fax 2146456018
Organization name utsw
Department physiology
Street address 5323 harry hines
City dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platform ID GPL6731
Series (1)
GSE11139 Elucidating a normal function of huntingtin by analysis of huntingtin-null mouse embryonic fibroblasts

Data table header descriptions
ID_REF
VALUE Normalized signal intensity, average normalization
BEAD_STDERR
Avg_NBEADS
Detection Pval

Data table
ID_REF VALUE BEAD_STDERR Avg_NBEADS Detection Pval
102450270 177.582 10.26549 35 0.5254877
104200035 202.0878 13.69593 45 0.1825047
100730138 201.4178 12.88702 45 0.1881687
102320427 154.7566 9.644003 47 0.872876
102630735 155.2673 8.210305 53 0.8659534
100450435 172.2184 10.04147 38 0.6154814
101230594 144.091 10.42224 31 0.9515418
100780541 180.169 9.25823 50 0.4902454
104200184 177.9138 9.10765 48 0.5210825
105360286 182.3721 14.39783 42 0.4612964
103060411 235.8202 13.3939 41 0.02265576
100630193 153.5028 8.995955 46 0.8854626
105270286 151.3065 8.296951 51 0.9043424
101690685 168.7281 10.76153 48 0.6790434
100060180 183.3237 9.986922 48 0.4436753
107100563 172.826 10.44363 53 0.6041536
100450451 152.8454 10.30155 41 0.8930145
100610092 145.4919 9.263417 42 0.9471366
104810452 35901.18 1697.843 41 0
6840019 12698.61 440.1682 36 0

Total number of rows: 47425

Table truncated, full table size 1728 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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