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Status |
Public on Sep 15, 2017 |
Title |
96hr siZNF148 Growth media 2 |
Sample type |
RNA |
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|
Source name |
Cell culture, LHCN-M2
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Organism |
Homo sapiens |
Characteristics |
tissue: Muscle cell line: LHCN-M2
|
Treatment protocol |
LHCN-M2 cells were treated with 20nM sicontrol or 20nM siZNF148 (dharmacon) for the indicated time in 6-well plates.
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Growth protocol |
LHCN-M2 cells were cultured in growth or differentiation media at 37°C, 5% CO2, as described by zhu et al, Aging Cell (2007) 6, pp515-523.
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was extracted using QIAGEN RNeasy Mini Kit following manufacturer's instructions
|
Label |
Cy3
|
Label protocol |
100ng of total RNA were labeled (Cy3) according to Agilent's labeling protocol
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|
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Hybridization protocol |
Microarray hybridization was performed at 65°C for 18 hours in Agilent's microarray hybridization chambers, followed by wash procedures according to the manufacturer’s recommended protocols
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Scan protocol |
Microarray was scanned in an Agilent scanner at 3μm resolution, and the array data was extracted with Agilent feature extraction software using the GE1_107_Sep09 protocol
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Description |
Gene expression after 96 hours siZNF148 transfection confluent in growth media, biological replicate 2
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Data processing |
Agilent Feature Extraction Software (version 10.7.3.1) was used along with LOWESS normalization
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Submission date |
Feb 02, 2017 |
Last update date |
Sep 15, 2017 |
Contact name |
Yong-Dong Wang |
E-mail(s) |
michael.wang@stjude.org
|
Phone |
9015954224
|
Organization name |
St. Jude Children's Research Hospital
|
Street address |
262 Danny Thomas Pl, MS1135
|
City |
Memphis |
State/province |
TN |
ZIP/Postal code |
38134 |
Country |
USA |
|
|
Platform ID |
GPL21185 |
Series (1) |
GSE94441 |
Analysis of gene expression in human LHCN-M2 cells with siControl or siZNF 148 |
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