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Sample GSM238942 Query DataSets for GSM238942
Status Public on Oct 23, 2007
Title VCX_affected_7
Sample type RNA
 
Source name brain, Primary visual cortex
Organism Homo sapiens
Characteristics Sample Amount: 10 ng
Bio-Source Name: VCX_affected_7
Organism: Human 
Organ/Tissue Type: brain 
Organ Region: Primary Visual Cortex 
Cell Type: pyramidal neuron 
Ethnicity: unknown 
Developmental Stage: Adult 
Disease State: Alzheimer's Disease 
Sex: female 
Genetic Variation: None 
Age: 95 years
Extracted molecule total RNA
Extraction protocol Arcturus PicoPure
Label biotin
Label protocol Affymetrix double-round expression profiling
 
Hybridization protocol Affymetrix's manufacturer's protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol Affymetrix GCOS
Description arrayconsortium.tgen.org::biosample.459571
cortical layer III neurons
Data processing MAS5.0; target scaling to 150
 
Submission date Oct 19, 2007
Last update date Jun 26, 2019
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL570
Series (1)
GSE5281 Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087
Reanalyzed by GSE133349

Data table header descriptions
ID_REF
VALUE expression signal
ABS_CALL absent/marginal/present
DETECTION P-VALUE significance of absent/marginal/absent call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 763.255 P 5.16732e-05
AFFX-BioB-M_at 1240.94 P 4.42873e-05
AFFX-BioB-3_at 682.082 P 4.42873e-05
AFFX-BioC-5_at 2360.54 P 4.42873e-05
AFFX-BioC-3_at 2475.22 P 4.42873e-05
AFFX-BioDn-5_at 5563.27 P 4.42873e-05
AFFX-BioDn-3_at 8685.81 P 4.42873e-05
AFFX-CreX-5_at 25280.4 P 5.16732e-05
AFFX-CreX-3_at 25834.3 P 4.42873e-05
AFFX-DapX-5_at 757.532 P 4.42873e-05
AFFX-DapX-M_at 5220.36 P 5.16732e-05
AFFX-DapX-3_at 12787.9 P 4.42873e-05
AFFX-LysX-5_at 94.3557 P 0.000195116
AFFX-LysX-M_at 624.944 P 7.00668e-05
AFFX-LysX-3_at 2662.3 P 5.16732e-05
AFFX-PheX-5_at 283.908 P 7.00668e-05
AFFX-PheX-M_at 852.008 P 4.42873e-05
AFFX-PheX-3_at 1957.39 P 4.42873e-05
AFFX-ThrX-5_at 170.606 P 4.42873e-05
AFFX-ThrX-M_at 944.583 P 4.42873e-05

Total number of rows: 54675

Table truncated, full table size 1630 Kbytes.




Supplementary file Size Download File type/resource
GSM238942.CEL.gz 4.5 Mb (ftp)(http) CEL
GSM238942.CHP.gz 301.3 Kb (ftp)(http) CHP
Processed data included within Sample table

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