NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM238874 Query DataSets for GSM238874
Status Public on Oct 23, 2007
Title VCX_affected_3
Sample type RNA
 
Source name brain, Primary visual cortex
Organism Homo sapiens
Characteristics Sample Amount: 10 ng
Bio-Source Name: VCX_affected_3
Organism: Human 
Organ/Tissue Type: brain 
Organ Region: Primary Visual Cortex 
Cell Type: pyramidal neuron 
Ethnicity: unknown 
Developmental Stage: Adult 
Disease State: Alzheimer's Disease 
Sex: male 
Genetic Variation: None 
Age: 75 years
Extracted molecule total RNA
Extraction protocol Arcturus PicoPure
Label biotin
Label protocol Affymetrix double-round expression profiling
 
Hybridization protocol Affymetrix's manufacturer's protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol Affymetrix GCOS
Description arrayconsortium.tgen.org::biosample.459458
cortical layer III neurons
Data processing MAS5.0; target scaling to 150
 
Submission date Oct 19, 2007
Last update date Jun 26, 2019
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL570
Series (1)
GSE5281 Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087
Reanalyzed by GSE133349

Data table header descriptions
ID_REF
VALUE expression signal
ABS_CALL absent/marginal/present
DETECTION P-VALUE significance of absent/marginal/absent call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1440.82 P 6.02111e-05
AFFX-BioB-M_at 2600.75 P 4.42873e-05
AFFX-BioB-3_at 1437.64 P 4.42873e-05
AFFX-BioC-5_at 4061.24 P 4.42873e-05
AFFX-BioC-3_at 4593.03 P 4.42873e-05
AFFX-BioDn-5_at 10025.8 P 4.42873e-05
AFFX-BioDn-3_at 17256.4 P 4.42873e-05
AFFX-CreX-5_at 40159 P 5.16732e-05
AFFX-CreX-3_at 46318.9 P 4.42873e-05
AFFX-DapX-5_at 1473.89 P 4.42873e-05
AFFX-DapX-M_at 11354.6 P 4.42873e-05
AFFX-DapX-3_at 24455.1 P 4.42873e-05
AFFX-LysX-5_at 192.833 P 7.00668e-05
AFFX-LysX-M_at 1586.26 P 5.16732e-05
AFFX-LysX-3_at 5412.77 P 4.42873e-05
AFFX-PheX-5_at 407.427 P 4.42873e-05
AFFX-PheX-M_at 1708.35 P 4.42873e-05
AFFX-PheX-3_at 3578.44 P 4.42873e-05
AFFX-ThrX-5_at 223.709 P 0.000258358
AFFX-ThrX-M_at 1783.76 P 4.42873e-05

Total number of rows: 54675

Table truncated, full table size 1620 Kbytes.




Supplementary file Size Download File type/resource
GSM238874.CEL.gz 4.2 Mb (ftp)(http) CEL
GSM238874.CHP.gz 304.4 Kb (ftp)(http) CHP
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap