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Sample GSM238848 Query DataSets for GSM238848
Status Public on Oct 23, 2007
Title SFG_affected_7
Sample type RNA
 
Source name brain, Superior frontal gyrus
Organism Homo sapiens
Characteristics Sample Amount: 10 ng
Bio-Source Name: SFG_affected_7
Organism: Human 
Organ/Tissue Type: brain 
Organ Region: Superior Frontal Gyrus 
Cell Type: pyramidal neuron 
Ethnicity: unknown 
Developmental Stage: Adult 
Disease State: Alzheimer's Disease 
Sex: male 
Genetic Variation: None 
Age: 87 years
Extracted molecule total RNA
Extraction protocol Arcturus PicoPure
Label biotin
Label protocol Affymetrix double-round expression profiling
 
Hybridization protocol Affymetrix's manufacturer's protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol Affymetrix GCOS
Description arrayconsortium.tgen.org::biosample.458576
cortical layer III neurons
Data processing MAS5.0; target scaling to 150
 
Submission date Oct 19, 2007
Last update date Jun 26, 2019
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL570
Series (1)
GSE5281 Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087
Reanalyzed by GSE133349

Data table header descriptions
ID_REF
VALUE expression signal
ABS_CALL absent/marginal/present
DETECTION P-VALUE significance of absent/marginal/absent call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2089.58 P 5.16732e-05
AFFX-BioB-M_at 3501.65 P 4.42873e-05
AFFX-BioB-3_at 2357.68 P 4.42873e-05
AFFX-BioC-5_at 5031.11 P 4.42873e-05
AFFX-BioC-3_at 6130.86 P 4.42873e-05
AFFX-BioDn-5_at 14563.5 P 4.42873e-05
AFFX-BioDn-3_at 21216.6 P 4.42873e-05
AFFX-CreX-5_at 57650.3 P 5.16732e-05
AFFX-CreX-3_at 63589 P 4.42873e-05
AFFX-DapX-5_at 5151.93 P 4.42873e-05
AFFX-DapX-M_at 23865.9 P 4.42873e-05
AFFX-DapX-3_at 60005.1 P 4.42873e-05
AFFX-LysX-5_at 753.376 P 4.42873e-05
AFFX-LysX-M_at 5374.81 P 4.42873e-05
AFFX-LysX-3_at 20229.9 P 4.42873e-05
AFFX-PheX-5_at 1813.99 P 4.42873e-05
AFFX-PheX-M_at 7153.75 P 4.42873e-05
AFFX-PheX-3_at 15489.1 P 4.42873e-05
AFFX-ThrX-5_at 1671.29 P 5.16732e-05
AFFX-ThrX-M_at 9934.72 P 4.42873e-05

Total number of rows: 54675

Table truncated, full table size 1614 Kbytes.




Supplementary file Size Download File type/resource
GSM238848.CEL.gz 4.0 Mb (ftp)(http) CEL
GSM238848.CHP.gz 307.2 Kb (ftp)(http) CHP
Processed data included within Sample table

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