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Sample GSM238837 Query DataSets for GSM238837
Status Public on Oct 23, 2007
Title PC_affected_5
Sample type RNA
 
Source name brain, Posterior cingulate cortex
Organism Homo sapiens
Characteristics Sample Amount: 10 ng
Bio-Source Name: PC_affected_5
Organism: Human 
Organ/Tissue Type: brain 
Organ Region: Posterior Singulate 
Cell Type: pyramidal neuron 
Ethnicity: unknown 
Developmental Stage: Adult 
Disease State: Alzheimer's Disease 
Sex: male 
Genetic Variation: None 
Age: 68 years
Extracted molecule total RNA
Extraction protocol Arcturus PicoPure
Label biotin
Label protocol Affymetrix double-round expression profiling
 
Hybridization protocol Affymetrix's manufacturer's protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol Affymetrix GCOS
Description arrayconsortium.tgen.org::biosample.458231
cortical layer III neurons
Data processing MAS5.0; target scaling to 150
 
Submission date Oct 19, 2007
Last update date Jun 26, 2019
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL570
Series (1)
GSE5281 Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087
Reanalyzed by GSE133349

Data table header descriptions
ID_REF
VALUE expression signal
ABS_CALL absent/marginal/present
DETECTION P-VALUE significance of absent/marginal/absent call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2554.4 P 0.000224668
AFFX-BioB-M_at 3587.96 P 4.42873e-05
AFFX-BioB-3_at 2377.63 P 4.42873e-05
AFFX-BioC-5_at 4994.39 P 5.16732e-05
AFFX-BioC-3_at 5670.4 P 4.42873e-05
AFFX-BioDn-5_at 13384.9 P 4.42873e-05
AFFX-BioDn-3_at 24890.5 P 4.42873e-05
AFFX-CreX-5_at 60938 P 5.16732e-05
AFFX-CreX-3_at 66628.5 P 4.42873e-05
AFFX-DapX-5_at 2878.47 P 6.02111e-05
AFFX-DapX-M_at 12127.5 P 5.16732e-05
AFFX-DapX-3_at 42802.3 P 4.42873e-05
AFFX-LysX-5_at 432.361 P 0.00010954
AFFX-LysX-M_at 2634.88 P 6.02111e-05
AFFX-LysX-3_at 9563.48 P 4.42873e-05
AFFX-PheX-5_at 941.842 P 6.02111e-05
AFFX-PheX-M_at 4846.38 P 4.42873e-05
AFFX-PheX-3_at 9024.57 P 4.42873e-05
AFFX-ThrX-5_at 838.345 P 0.000126798
AFFX-ThrX-M_at 5019.44 P 4.42873e-05

Total number of rows: 54675

Table truncated, full table size 1600 Kbytes.




Supplementary file Size Download File type/resource
GSM238837.CEL.gz 4.1 Mb (ftp)(http) CEL
GSM238837.CHP.gz 303.0 Kb (ftp)(http) CHP
Processed data included within Sample table

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