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Sample GSM238827 Query DataSets for GSM238827
Status Public on Oct 23, 2007
Title PC_affected_2
Sample type RNA
 
Source name brain, Posterior cingulate cortex
Organism Homo sapiens
Characteristics Sample Amount: 10 ng
Bio-Source Name: PC_affected_2
Organism: Human 
Organ/Tissue Type: brain 
Organ Region: Posterior Singulate 
Cell Type: pyramidal neuron 
Ethnicity: unknown 
Developmental Stage: Adult 
Disease State: Alzheimer's Disease 
Sex: male 
Genetic Variation: None 
Age: 81 years
Extracted molecule total RNA
Extraction protocol Arcturus PicoPure
Label biotin
Label protocol Affymetrix double-round expression profiling
 
Hybridization protocol Affymetrix's manufacturer's protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol Affymetrix GCOS
Description arrayconsortium.tgen.org::biosample.457942
cortical layer III neurons
Data processing MAS5.0; target scaling to 150
 
Submission date Oct 19, 2007
Last update date Jun 26, 2019
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL570
Series (1)
GSE5281 Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087
Reanalyzed by GSE133349

Data table header descriptions
ID_REF
VALUE expression signal
ABS_CALL absent/marginal/present
DETECTION P-VALUE significance of absent/marginal/absent call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2567.89 P 0.00010954
AFFX-BioB-M_at 4918.59 P 4.42873e-05
AFFX-BioB-3_at 2974.71 P 4.42873e-05
AFFX-BioC-5_at 6655.2 P 4.42873e-05
AFFX-BioC-3_at 7893.85 P 4.42873e-05
AFFX-BioDn-5_at 20130.1 P 4.42873e-05
AFFX-BioDn-3_at 26950.9 P 4.42873e-05
AFFX-CreX-5_at 81438.1 P 5.16732e-05
AFFX-CreX-3_at 91002.5 P 4.42873e-05
AFFX-DapX-5_at 6222.32 P 4.42873e-05
AFFX-DapX-M_at 30492.8 P 4.42873e-05
AFFX-DapX-3_at 83767.7 P 4.42873e-05
AFFX-LysX-5_at 885.624 P 4.42873e-05
AFFX-LysX-M_at 5737.99 P 4.42873e-05
AFFX-LysX-3_at 29216.7 P 4.42873e-05
AFFX-PheX-5_at 2219.12 P 4.42873e-05
AFFX-PheX-M_at 12452.6 P 4.42873e-05
AFFX-PheX-3_at 26509.5 P 4.42873e-05
AFFX-ThrX-5_at 1224.32 P 6.02111e-05
AFFX-ThrX-M_at 6850.21 P 4.42873e-05

Total number of rows: 54675

Table truncated, full table size 1599 Kbytes.




Supplementary file Size Download File type/resource
GSM238827.CEL.gz 3.9 Mb (ftp)(http) CEL
GSM238827.CHP.gz 304.9 Kb (ftp)(http) CHP
Processed data included within Sample table

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