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Sample GSM238826 Query DataSets for GSM238826
Status Public on Oct 23, 2007
Title PC_affected_1
Sample type RNA
 
Source name brain, Posterior cingulate cortex
Organism Homo sapiens
Characteristics sample amount: 10 ng
bio-source name: PC_affected_1
organism: Human 
organ/tissue type: brain 
organ region: Posterior Cingulate 
cell type: pyramidal neuron 
ethnicity: unknown 
developmental stage: Adult 
disease state: Alzheimer's Disease 
sex: female 
genetic variation: None 
age: 73 years
Extracted molecule total RNA
Extraction protocol Arcturus PicoPure
Label biotin
Label protocol Affymetrix double-round expression profiling
 
Hybridization protocol Affymetrix's manufacturer's protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol Affymetrix GCOS
Description arrayconsortium.tgen.org::biosample.457900
cortical layer III neurons
Data processing MAS5.0; target scaling to 150
 
Submission date Oct 19, 2007
Last update date Jun 26, 2019
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL570
Series (1)
GSE5281 Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087
Reanalyzed by GSE133349

Data table header descriptions
ID_REF
VALUE expression signal
ABS_CALL absent/marginal/present
DETECTION P-VALUE significance of absent/marginal/absent call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1087.58 P 8.14279e-05
AFFX-BioB-M_at 1838.48 P 4.42873e-05
AFFX-BioB-3_at 1046.12 P 4.42873e-05
AFFX-BioC-5_at 3060.98 P 4.42873e-05
AFFX-BioC-3_at 3157.95 P 4.42873e-05
AFFX-BioDn-5_at 7336.88 P 4.42873e-05
AFFX-BioDn-3_at 10734.8 P 4.42873e-05
AFFX-CreX-5_at 34305.9 P 4.42873e-05
AFFX-CreX-3_at 38431.5 P 4.42873e-05
AFFX-DapX-5_at 622.124 P 5.16732e-05
AFFX-DapX-M_at 8038.55 P 4.42873e-05
AFFX-DapX-3_at 21448.2 P 4.42873e-05
AFFX-LysX-5_at 124.113 P 0.00124642
AFFX-LysX-M_at 1241.16 P 6.02111e-05
AFFX-LysX-3_at 4086.25 P 4.42873e-05
AFFX-PheX-5_at 303.785 P 6.02111e-05
AFFX-PheX-M_at 1593.85 P 4.42873e-05
AFFX-PheX-3_at 2769.72 P 4.42873e-05
AFFX-ThrX-5_at 215.48 P 0.00227496
AFFX-ThrX-M_at 1261.73 P 4.42873e-05

Total number of rows: 54675

Table truncated, full table size 1618 Kbytes.




Supplementary file Size Download File type/resource
GSM238826.CEL.gz 4.1 Mb (ftp)(http) CEL
GSM238826.CHP.gz 306.1 Kb (ftp)(http) CHP
Processed data included within Sample table

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