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Sample GSM238809 Query DataSets for GSM238809
Status Public on Oct 23, 2007
Title MTG_affected_1
Sample type RNA
 
Source name brain, Middle temporal gyrus
Organism Homo sapiens
Characteristics sample amount: 10 ng
bio-source name: MTG_affected_1
organism: Human 
organ/tissue type: brain 
organ region: Medial Temporal Gyrus 
cell type: pyramidal neuron 
ethnicity: unknown 
developmental stage: Adult 
disease state: Alzheimer's Disease 
sex: female 
genetic variation: None 
age: 73 years
Extracted molecule total RNA
Extraction protocol Arcturus PicoPure
Label biotin
Label protocol Affymetrix double-round expression profiling
 
Hybridization protocol Affymetrix's manufacturer's protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol Affymetrix GCOS
Description arrayconsortium.tgen.org::biosample.457508
cortical layer III neurons
Data processing MAS5.0; target scaling to 150
 
Submission date Oct 19, 2007
Last update date Jun 26, 2019
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL570
Series (1)
GSE5281 Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087
Reanalyzed by GSE133349

Data table header descriptions
ID_REF
VALUE expression signal
ABS_CALL absent/marginal/present
DETECTION P-VALUE significance of absent/marginal/absent call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2024.93 P 5.16732e-05
AFFX-BioB-M_at 3544.14 P 4.42873e-05
AFFX-BioB-3_at 2246.01 P 4.42873e-05
AFFX-BioC-5_at 7359.54 P 4.42873e-05
AFFX-BioC-3_at 5856.16 P 4.42873e-05
AFFX-BioDn-5_at 14100.5 P 4.42873e-05
AFFX-BioDn-3_at 23054.8 P 4.42873e-05
AFFX-CreX-5_at 55483.4 P 5.16732e-05
AFFX-CreX-3_at 60544.2 P 4.42873e-05
AFFX-DapX-5_at 666.852 P 4.42873e-05
AFFX-DapX-M_at 6793.26 P 4.42873e-05
AFFX-DapX-3_at 24225.8 P 4.42873e-05
AFFX-LysX-5_at 115.151 P 0.000581214
AFFX-LysX-M_at 943.501 P 7.00668e-05
AFFX-LysX-3_at 4129.13 P 4.42873e-05
AFFX-PheX-5_at 440.695 P 6.02111e-05
AFFX-PheX-M_at 1752.98 P 4.42873e-05
AFFX-PheX-3_at 4300.93 P 4.42873e-05
AFFX-ThrX-5_at 290.885 P 9.4506e-05
AFFX-ThrX-M_at 1682.26 P 4.42873e-05

Total number of rows: 54675

Table truncated, full table size 1617 Kbytes.




Supplementary file Size Download File type/resource
GSM238809.CEL.gz 4.1 Mb (ftp)(http) CEL
GSM238809.CHP.gz 305.8 Kb (ftp)(http) CHP
Processed data included within Sample table

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