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Sample GSM238805 Query DataSets for GSM238805
Status Public on Oct 23, 2007
Title HIP_affected_7
Sample type RNA
 
Source name brain, Hippocampus
Organism Homo sapiens
Characteristics sample amount: 10 ng
bio-source name: HIP_affected_7
organism: Human 
organ/tissue type: brain 
organ region: hippocampus 
cell type: pyramidal neuron 
ethnicity: unknown 
developmental stage: Adult 
disease state: Alzheimer's Disease 
sex: male 
genetic variation: None 
age: 79 years
Extracted molecule total RNA
Extraction protocol Arcturus PicoPure
Label biotin
Label protocol Affymetrix double-round expression profiling
 
Hybridization protocol Affymetrix's manufacturer's protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol Affymetrix GCOS
Description arrayconsortium.tgen.org::biosample.457411
cortical layer III neurons
Data processing MAS5.0; target scaling to 150
 
Submission date Oct 19, 2007
Last update date Jun 26, 2019
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL570
Series (1)
GSE5281 Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087
Reanalyzed by GSE133349

Data table header descriptions
ID_REF
VALUE expression signal
ABS_CALL absent/marginal/present
DETECTION P-VALUE significance of absent/marginal/absent call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1232.55 P 0.000126798
AFFX-BioB-M_at 2238.98 P 4.42873e-05
AFFX-BioB-3_at 1361.22 P 4.42873e-05
AFFX-BioC-5_at 3422.19 P 4.42873e-05
AFFX-BioC-3_at 4306.65 P 4.42873e-05
AFFX-BioDn-5_at 9212.8 P 4.42873e-05
AFFX-BioDn-3_at 13514.9 P 4.42873e-05
AFFX-CreX-5_at 40399.5 P 5.16732e-05
AFFX-CreX-3_at 47136.3 P 4.42873e-05
AFFX-DapX-5_at 812.294 P 4.42873e-05
AFFX-DapX-M_at 4870.54 P 5.16732e-05
AFFX-DapX-3_at 24517.5 P 4.42873e-05
AFFX-LysX-5_at 163.648 P 0.002021
AFFX-LysX-M_at 1179.65 P 7.00668e-05
AFFX-LysX-3_at 6010.04 P 4.42873e-05
AFFX-PheX-5_at 221.105 P 0.000662269
AFFX-PheX-M_at 1467.93 P 4.42873e-05
AFFX-PheX-3_at 3671.58 P 4.42873e-05
AFFX-ThrX-5_at 293.619 P 0.000752926
AFFX-ThrX-M_at 1860.9 P 4.42873e-05

Total number of rows: 54675

Table truncated, full table size 1609 Kbytes.




Supplementary file Size Download File type/resource
GSM238805.CEL.gz 4.2 Mb (ftp)(http) CEL
GSM238805.CHP.gz 303.3 Kb (ftp)(http) CHP
Processed data included within Sample table

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