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GEO accession:
Sample GSM238804
Query DataSets for GSM238804
Status
Public on Oct 23, 2007
Title
HIP_affected_6
Sample type
RNA
Source name
brain, Hippocampus
Organism
Homo sapiens
Characteristics
sample amount: 10 ng
bio-source name: HIP_affected_6
organism: Human
organ/tissue type: brain
organ region: hippocampus
cell type: pyramidal neuron
ethnicity: unknown
developmental stage: Adult
disease state: Alzheimer's Disease
sex: female
genetic variation: None
age: 77 years
Extracted molecule
total RNA
Extraction protocol
Arcturus PicoPure
Label
biotin
Label protocol
Affymetrix double-round expression profiling
Hybridization protocol
Affymetrix's manufacturer's protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol
Affymetrix GCOS
Description
arrayconsortium.tgen.org::biosample.457382
cortical layer III neurons
Data processing
MAS5.0; target scaling to 150
Submission date
Oct 19, 2007
Last update date
Jun 26, 2019
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org
Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL570
Series (1)
GSE5281
Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Reanalyzed by
GSE133349
Data table header descriptions
ID_REF
VALUE
expression signal
ABS_CALL
absent/marginal/present
DETECTION P-VALUE
significance of absent/marginal/absent call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
957.545
P
0.000126798
AFFX-BioB-M_at
1474.51
P
4.42873e-05
AFFX-BioB-3_at
1041.97
P
4.42873e-05
AFFX-BioC-5_at
2478.7
P
4.42873e-05
AFFX-BioC-3_at
3050.89
P
4.42873e-05
AFFX-BioDn-5_at
6528.48
P
4.42873e-05
AFFX-BioDn-3_at
9447.11
P
4.42873e-05
AFFX-CreX-5_at
29678
P
5.16732e-05
AFFX-CreX-3_at
35050.6
P
4.42873e-05
AFFX-DapX-5_at
1003.69
P
4.42873e-05
AFFX-DapX-M_at
5844.6
P
5.16732e-05
AFFX-DapX-3_at
19249
P
4.42873e-05
AFFX-LysX-5_at
117.392
P
4.42873e-05
AFFX-LysX-M_at
998.275
P
5.16732e-05
AFFX-LysX-3_at
5706.85
P
5.16732e-05
AFFX-PheX-5_at
272.921
P
0.000258358
AFFX-PheX-M_at
1726.31
P
4.42873e-05
AFFX-PheX-3_at
4778.78
P
4.42873e-05
AFFX-ThrX-5_at
188.44
P
0.000753643
AFFX-ThrX-M_at
1067.88
P
4.42873e-05
Total number of rows:
54675
Table truncated, full table size
1615 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM238804.CEL.gz
4.3 Mb
(ftp)
(http)
CEL
GSM238804.CHP.gz
302.5 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
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