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GEO accession:
Sample GSM238799
Query DataSets for GSM238799
Status
Public on Oct 23, 2007
Title
HIP_affected_1
Sample type
RNA
Source name
brain, Hippocampus
Organism
Homo sapiens
Characteristics
sample amount: 10 ng
bio-source name: HIP_affected_1
organism: Human
organ/tissue type: brain
organ region: hippocampus
cell type: pyramidal neuron
ethnicity: unknown
developmental stage: Adult
disease state: Alzheimer's Disease
sex: male
genetic variation: None
age: 72 years
Extracted molecule
total RNA
Extraction protocol
Arcturus PicoPure
Label
biotin
Label protocol
Affymetrix double-round expression profiling
Hybridization protocol
Affymetrix's manufacturer's protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol
Affymetrix GCOS
Description
arrayconsortium.tgen.org::biosample.457222
cortical layer III neurons
Data processing
MAS5.0; target scaling to 150
Submission date
Oct 19, 2007
Last update date
Jun 26, 2019
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org
Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL570
Series (1)
GSE5281
Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Reanalyzed by
GSE133349
Data table header descriptions
ID_REF
VALUE
expression signal
ABS_CALL
absent/marginal/present
DETECTION P-VALUE
significance of absent/marginal/absent call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
408.226
P
0.000581214
AFFX-BioB-M_at
658.04
P
4.42873e-05
AFFX-BioB-3_at
414.633
P
4.42873e-05
AFFX-BioC-5_at
997.426
P
5.16732e-05
AFFX-BioC-3_at
1312.53
P
4.42873e-05
AFFX-BioDn-5_at
2873.74
P
4.42873e-05
AFFX-BioDn-3_at
3631.78
P
4.42873e-05
AFFX-CreX-5_at
13266.7
P
5.16732e-05
AFFX-CreX-3_at
14360.7
P
4.42873e-05
AFFX-DapX-5_at
172.253
P
8.14279e-05
AFFX-DapX-M_at
1607.3
P
5.16732e-05
AFFX-DapX-3_at
5450.23
P
4.42873e-05
AFFX-LysX-5_at
78.0584
P
0.000509415
AFFX-LysX-M_at
266.584
P
8.14279e-05
AFFX-LysX-3_at
1041.52
P
5.16732e-05
AFFX-PheX-5_at
106.233
P
0.000146581
AFFX-PheX-M_at
395.088
P
4.42873e-05
AFFX-PheX-3_at
814.118
P
4.42873e-05
AFFX-ThrX-5_at
88.4834
P
0.000224668
AFFX-ThrX-M_at
411.12
P
4.42873e-05
Total number of rows:
54675
Table truncated, full table size
1634 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM238799.CEL.gz
4.6 Mb
(ftp)
(http)
CEL
GSM238799.CHP.gz
299.2 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
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