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GEO accession:
Sample GSM238798
Query DataSets for GSM238798
Status
Public on Oct 23, 2007
Title
EC_affected_10
Sample type
RNA
Source name
brain, Entorhinal Cortex
Organism
Homo sapiens
Characteristics
Sample Amount: 10 ng
Bio-Source Name: EC_affected_10
Organism: Human
Organ/Tissue Type: brain
Organ Region: Entorhinal Cortex
Cell Type: pyramidal neuron
Ethnicity: unknown
Developmental Stage: Adult
Disease State: Alzheimer's Disease
Sex: male
Genetic Variation: None
Age: 80 years
Extracted molecule
total RNA
Extraction protocol
Arcturus PicoPurebo
Label
biotin
Label protocol
Affymetrix double-round expression profiling
Hybridization protocol
Affymetrix's manufacturer's protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol
Affymetrix GCOS
Description
arrayconsortium.tgen.org::biosample.456833
cortical layer III neurons
Data processing
MAS5.0; target scaling to 150
Submission date
Oct 19, 2007
Last update date
Jun 26, 2019
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org
Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL570
Series (1)
GSE5281
Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Reanalyzed by
GSE133349
Data table header descriptions
ID_REF
VALUE
expression signal
ABS_CALL
absent/marginal/present
DETECTION P-VALUE
significance of absent/marginal/absent call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
655.612
P
0.000662269
AFFX-BioB-M_at
1053.67
P
4.42873e-05
AFFX-BioB-3_at
611.484
P
4.42873e-05
AFFX-BioC-5_at
1633.44
P
8.14279e-05
AFFX-BioC-3_at
1436.56
P
4.42873e-05
AFFX-BioDn-5_at
2381.2
P
4.42873e-05
AFFX-BioDn-3_at
8434.73
P
5.16732e-05
AFFX-CreX-5_at
19266.6
P
5.16732e-05
AFFX-CreX-3_at
19675.3
P
4.42873e-05
AFFX-DapX-5_at
24.5982
A
0.0676785
AFFX-DapX-M_at
20.2159
A
0.41138
AFFX-DapX-3_at
5.96338
A
0.804734
AFFX-LysX-5_at
17.4235
A
0.156732
AFFX-LysX-M_at
19.2343
A
0.382599
AFFX-LysX-3_at
22.5055
A
0.13134
AFFX-PheX-5_at
4.89569
A
0.699394
AFFX-PheX-M_at
12.0458
A
0.672921
AFFX-PheX-3_at
14.1587
A
0.58862
AFFX-ThrX-5_at
16.7017
A
0.58862
AFFX-ThrX-M_at
3.60443
A
0.783476
Total number of rows:
54675
Table truncated, full table size
1616 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM238798.CEL.gz
4.8 Mb
(ftp)
(http)
CEL
GSM238798.CHP.gz
296.6 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
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