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GEO accession:
Sample GSM238796
Query DataSets for GSM238796
Status
Public on Oct 23, 2007
Title
EC_affected_8
Sample type
RNA
Source name
brain, Entorhinal Cortex
Organism
Homo sapiens
Characteristics
sample amount: 10 ng
bio-source name: EC_affected_8
organism: Human
organ/tissue type: brain
organ region: Entorhinal Cortex
cell type: pyramidal neuron
ethnicity: unknown
developmental stage: Adult
disease state: Alzheimer's Disease
sex: male
genetic variation: None
age: 86 years
Extracted molecule
total RNA
Extraction protocol
Arcturus PicoPurebo
Label
biotin
Label protocol
Affymetrix double-round expression profiling
Hybridization protocol
Affymetrix's manufacturer's protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol
Affymetrix GCOS
Description
arrayconsortium.tgen.org::biosample.456816
cortical layer III neurons
Data processing
MAS5.0; target scaling to 150
Submission date
Oct 19, 2007
Last update date
Jun 26, 2019
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org
Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL570
Series (1)
GSE5281
Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Reanalyzed by
GSE133349
Data table header descriptions
ID_REF
VALUE
expression signal
ABS_CALL
absent/marginal/present
DETECTION P-VALUE
significance of absent/marginal/absent call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
989.059
P
0.000509415
AFFX-BioB-M_at
1373.83
P
4.42873e-05
AFFX-BioB-3_at
757.617
P
5.16732e-05
AFFX-BioC-5_at
1820.49
P
7.00668e-05
AFFX-BioC-3_at
1587.45
P
4.42873e-05
AFFX-BioDn-5_at
2249.97
P
4.42873e-05
AFFX-BioDn-3_at
10180.8
P
5.16732e-05
AFFX-CreX-5_at
23630.3
P
5.16732e-05
AFFX-CreX-3_at
24478.9
P
4.42873e-05
AFFX-DapX-5_at
48.0289
A
0.108979
AFFX-DapX-M_at
42.3254
A
0.368438
AFFX-DapX-3_at
5.01877
A
0.957052
AFFX-LysX-5_at
18.9557
A
0.340661
AFFX-LysX-M_at
31.0361
A
0.544587
AFFX-LysX-3_at
38.8112
M
0.0584279
AFFX-PheX-5_at
5.45755
A
0.686277
AFFX-PheX-M_at
4.14787
A
0.937071
AFFX-PheX-3_at
25.3407
A
0.645547
AFFX-ThrX-5_at
4.08148
A
0.876448
AFFX-ThrX-M_at
26.5626
A
0.645547
Total number of rows:
54675
Table truncated, full table size
1608 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM238796.CEL.gz
4.8 Mb
(ftp)
(http)
CEL
GSM238796.CHP.gz
295.5 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
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