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GEO accession:
Sample GSM238763
Query DataSets for GSM238763
Status
Public on Oct 23, 2007
Title
EC_affected_1
Sample type
RNA
Source name
brain, Entorhinal Cortex
Organism
Homo sapiens
Characteristics
Sample Amount: 10 ng
Bio-Source Name: EC_affected_1
Organism: Human
Organ/Tissue Type: brain
Organ Region: Entorhinal Cortex
Cell Type: pyramidal neuron
Ethnicity: unknown
Developmental Stage: Adult
Disease State: Alzheimer's Disease
Sex: female
Genetic Variation: None
Age: 82 years
Extracted molecule
total RNA
Extraction protocol
Arcturus PicoPure
Label
biotin
Label protocol
Affymetrix double-round expression profiling
Hybridization protocol
Affymetrix's manufacturer protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol
Affymetrix GCOS
Description
arrayconsortium.tgen.org::biosample.456701
cortical layer III neurons
Data processing
MAS5.0, target scaling to 150
Submission date
Oct 19, 2007
Last update date
Jun 26, 2019
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org
Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL570
Series (1)
GSE5281
Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Reanalyzed by
GSE133349
Data table header descriptions
ID_REF
VALUE
expression signal
ABS_CALL
absent/marginal/present
DETECTION P-VALUE
significance of absent/marginal/absent call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
3205.04
P
0.000340305
AFFX-BioB-M_at
5855.52
P
4.42873e-05
AFFX-BioB-3_at
3943.69
P
4.42873e-05
AFFX-BioC-5_at
7630.4
P
6.02111e-05
AFFX-BioC-3_at
6365.48
P
4.42873e-05
AFFX-BioDn-5_at
11298.3
P
4.42873e-05
AFFX-BioDn-3_at
37942.1
P
4.42873e-05
AFFX-CreX-5_at
90867
P
5.16732e-05
AFFX-CreX-3_at
90076.8
P
4.42873e-05
AFFX-DapX-5_at
42.2234
A
0.39692
AFFX-DapX-M_at
45.8552
A
0.60308
AFFX-DapX-3_at
63.6575
A
0.48511
AFFX-LysX-5_at
9.50611
A
0.876448
AFFX-LysX-M_at
41.0504
A
0.631562
AFFX-LysX-3_at
45.8154
A
0.147939
AFFX-PheX-5_at
84.6232
A
0.19506
AFFX-PheX-M_at
35.122
A
0.574038
AFFX-PheX-3_at
29.1029
A
0.749204
AFFX-ThrX-5_at
28.54
A
0.712257
AFFX-ThrX-M_at
70.9617
A
0.250777
Total number of rows:
54675
Table truncated, full table size
1599 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM238763.CEL.gz
4.0 Mb
(ftp)
(http)
CEL
GSM238763.CHP.gz
304.0 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
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