|
Status |
Public on Feb 15, 2010 |
Title |
3624T early stage CRC patient's tumor |
Sample type |
RNA |
|
|
Source name |
tumor collected and archived within 30mins after surgery
|
Organism |
Homo sapiens |
Characteristics |
Sex:F, age:83
|
Extracted molecule |
total RNA |
Extraction protocol |
Extraction of total RNA was performed according to the manufacturer's instructions.
|
Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix)
|
|
|
Hybridization protocol |
Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45 °C on HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
|
Scan protocol |
GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000.
|
Description |
Gene expression data from patients without metastasis
|
Data processing |
The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The baseline was arbitrarily set to 500.
|
|
|
Submission date |
Oct 17, 2007 |
Last update date |
Aug 28, 2018 |
Contact name |
Yi Hong |
E-mail(s) |
hong.yi@sgh.com.sg, fbap8570@yahoo.com
|
Organization name |
Singapore General Hospital
|
Department |
Colorectal Surgery
|
Lab |
CRC research lab
|
Street address |
Outram Road
|
City |
Singapore |
ZIP/Postal code |
169608 |
Country |
Singapore |
|
|
Platform ID |
GPL570 |
Series (1) |
GSE9348 |
Expression data from healthy controls and early stage CRC patient's tumor |
|
Relations |
Reanalyzed by |
GSE119087 |