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Sample GSM2070633 Query DataSets for GSM2070633
Status Public on Apr 01, 2016
Title glu-24h-2
Sample type RNA
 
Source name glu 24h
Organism Oryza sativa
Characteristics cultivar: Nipponbare
tissue: 4th leaves at 4-leaf stage
Treatment protocol 10 mM glutamate from roots
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Trizol and cleaned up with an RNeasy plant mini kit (Qiagen).
Label Cy3
Label protocol The RNAs (400-ng aliquots) were labeled with a Low RNA Input Linear Amplification/Labeling Kit (Agilent Technologies)
 
Hybridization protocol Agilent protocol G4140-90040
Scan protocol Slides were scanned immediately after washing on Agilent Scanner model G2505B and software G2565BA using default parameters
Description SAMPLE 8
Data processing The scanned images were analyzed with Feature Extraction software (version 9.1; Agilent Technologies) using default parameters.
 
Submission date Feb 24, 2016
Last update date Apr 02, 2016
Contact name Hiroshi Takatsuji
E-mail(s) takatsuh@affrc.go.jp
Organization name National Institute of Agrobiological Sciences
Department Division of Plant Sciences
Lab Plant Disease Resistance Research Unit
Street address 2-1-2 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8602
Country Japan
 
Platform ID GPL8852
Series (1)
GSE78266 Rice genes responsive to Glu

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
Os03g0146300|mRNA|AK121395|CDS+3'UTR -1.5300292
Os03g0100100|COMBINER|CI224620|6 0.3067702
Os06g0591200|mRNA|AK062563|CDS+3'UTR 0.8985611
Os01g0658400|mRNA|AK099284|CDS+3'UTR 0.8090563
Os01g0388500|COMBINER_EST|Os01g0388500|8 0.4412672
Os12g0403800|mRNA|AK059940|CDS+3'UTR 0.11676401
Os07g0572000|mRNA|AK111653|CDS+3'UTR -0.3337499
Os06g0530200|mRNA|AK073116|CDS+3'UTR 0.2125957
Os02g0149500|mRNA|AK109901|CDS+3'UTR -0.1628933
Os02g0187300|mRNA|AK062633|UTR -0.050266385
Os09g0546900|mRNA|AK062365|CDS+3'UTR 3.8557067
Os04g0308100|mRNA|AK108495|CDS+3'UTR 0.8638962
Os03g0194500|COMBINER_EST|CI391251|0 -0.042494416
Os08g0555800|COMBINER_EST|Os08g0555800|8 -0.44427156
Os10g0522900|mRNA|AK068314|CDS+3'UTR 0.035843134
Os01g0871100|mRNA|AK064743|CDS+3'UTR 0.76031893
Os06g0561800|COMBINER_EST|Os06g0561800|8 -0.45217288
Os03g0684000|mRNA|AK105025|CDS+3'UTR 0.1412276
Os07g0664600|mRNA|AK105211|CDS+3'UTR -0.42304945
Os04g0484300|COMBINER|CI434770|6 -0.83411765

Total number of rows: 42537

Table truncated, full table size 1986 Kbytes.




Supplementary file Size Download File type/resource
GSM2070633_Glu-24h-2.txt.gz 7.6 Mb (ftp)(http) TXT
Processed data included within Sample table
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