NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2070632 Query DataSets for GSM2070632
Status Public on Apr 01, 2016
Title glu-24h-1
Sample type RNA
 
Source name glu 24h
Organism Oryza sativa
Characteristics cultivar: Nipponbare
tissue: 4th leaves at 4-leaf stage
Treatment protocol 10 mM glutamate from roots
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Trizol and cleaned up with an RNeasy plant mini kit (Qiagen).
Label Cy3
Label protocol The RNAs (400-ng aliquots) were labeled with a Low RNA Input Linear Amplification/Labeling Kit (Agilent Technologies)
 
Hybridization protocol Agilent protocol G4140-90040
Scan protocol Slides were scanned immediately after washing on Agilent Scanner model G2505B and software G2565BA using default parameters
Description SAMPLE 7
Data processing The scanned images were analyzed with Feature Extraction software (version 9.1; Agilent Technologies) using default parameters.
 
Submission date Feb 24, 2016
Last update date Apr 02, 2016
Contact name Hiroshi Takatsuji
E-mail(s) takatsuh@affrc.go.jp
Organization name National Institute of Agrobiological Sciences
Department Division of Plant Sciences
Lab Plant Disease Resistance Research Unit
Street address 2-1-2 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8602
Country Japan
 
Platform ID GPL8852
Series (1)
GSE78266 Rice genes responsive to Glu

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
Os03g0146300|mRNA|AK121395|CDS+3'UTR -1.4572142
Os03g0100100|COMBINER|CI224620|6 0.22962606
Os06g0591200|mRNA|AK062563|CDS+3'UTR 0.27590048
Os01g0658400|mRNA|AK099284|CDS+3'UTR 0.80887794
Os01g0388500|COMBINER_EST|Os01g0388500|8 0.052877128
Os12g0403800|mRNA|AK059940|CDS+3'UTR 0.18760341
Os07g0572000|mRNA|AK111653|CDS+3'UTR -0.14648736
Os06g0530200|mRNA|AK073116|CDS+3'UTR 0.3732841
Os02g0149500|mRNA|AK109901|CDS+3'UTR -0.3506589
Os02g0187300|mRNA|AK062633|UTR 0.08936584
Os09g0546900|mRNA|AK062365|CDS+3'UTR 4.283196
Os04g0308100|mRNA|AK108495|CDS+3'UTR 0.98495084
Os03g0194500|COMBINER_EST|CI391251|0 -0.09076464
Os08g0555800|COMBINER_EST|Os08g0555800|8 0.026735783
Os10g0522900|mRNA|AK068314|CDS+3'UTR -0.31329322
Os01g0871100|mRNA|AK064743|CDS+3'UTR 0.4290611
Os06g0561800|COMBINER_EST|Os06g0561800|8 0.027002692
Os03g0684000|mRNA|AK105025|CDS+3'UTR 0.12958324
Os07g0664600|mRNA|AK105211|CDS+3'UTR 0.03947401
Os04g0484300|COMBINER|CI434770|6 -0.37900996

Total number of rows: 42537

Table truncated, full table size 1988 Kbytes.




Supplementary file Size Download File type/resource
GSM2070632_Glu-24h-1.txt.gz 7.6 Mb (ftp)(http) TXT
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap